HHsearch alignment for GI: 254780545 and conserved domain: pfam00406

Probab=96.79  E-value=0.0025  Score=43.04  Aligned_cols=112  Identities=23%  Similarity=0.360  Sum_probs=60.0

Q ss_pred             ECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC---HHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCC
Q ss_conf             0378742588899997424699702058578864442033---2459999999987378012063235641445578988
Q gi|254780545|r  186 LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG---ASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGG  262 (647)
Q Consensus       186 l~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g---~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~  262 (647)
T Consensus         1 i~G~PGsGKgTqa~~La~~~~~~~is~--GdllR~~~~~~s~~g~~i~~~i~~G-~lvp---------------------   56 (186)
T pfam00406         1 LLGPPGAGKGTQAERIVQKYGIVHLST--GDLLRAEVKSGTELGKEAKEYMDKG-ELVP---------------------   56 (186)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCEEECH--HHHHHHHHHCCCHHHHHHHHHHHCC-CCCC---------------------
T ss_conf             918898985999999999859906769--9999999862887999999999869-9543---------------------


Q ss_pred             CCHHHHHHHHHHHHH-HCCCCCCCCEEEEEECCCCCCCCHH------HCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf             626889889989985-3032357782999962981008833------316564231410001347889999999
Q gi|254780545|r  263 GNDEREQTLNQLLVE-MDGFESSEGVILIAATNRPDVLDAA------LLRPGRFDRQITVPNPDIVGREHILMV  329 (647)
Q Consensus       263 ~~~e~~~~ln~ll~~-mdg~~~~~~v~vi~aTn~~~~lD~a------l~RpgRfd~~i~~~~P~~~~r~~i~~~  329 (647)
T Consensus        57 --d---~i~~~l~~~~l~~~~~~~g~iLD---GfPRt~~Qa~~l~~~l~~~~~~~~Vi~l~~~~~~~~~Rl~~R  122 (186)
T pfam00406        57 --D---EVVVGLVKERLEQNDCKNGFLLD---GFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLTGR  122 (186)
T ss_pred             --H---HHHHHHHHHHHCCCCCCCCEEEE---CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCC
T ss_conf             --0---99999999997074554866873---798989999999999974998777999973789999999766