HHsearch alignment for GI: 254780545 and conserved domain: pfam00493

Probab=98.77  E-value=4.9e-08  Score=77.17  Aligned_cols=158  Identities=28%  Similarity=0.338  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCC--CCCEEECCCCCHHHHHHHHHHHCCCC-CCEECCCHHHHHHHHHHC
Q ss_conf             8985288999999-9998743356766420123--33110037874258889999742469-970205857886444203
Q gi|254780545|r  149 DVAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRI--PHGVLLVGPPGTGKTLLARAVAGEAN-VPFFTISGSDFVELFVGV  224 (647)
Q Consensus       149 dv~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~--p~g~ll~GppGtGKTlla~a~a~e~~-~~f~~~~~s~~~~~~~g~  224 (647)
T Consensus        25 ~i~G~~~vK~ai~l~l~---gg~~~~~~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~tsg~~ss----~~GL   97 (327)
T pfam00493        25 SIYGHEDVKKAILLQLF---GGVKKNLPDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSS----AAGL   97 (327)
T ss_pred             CCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC----CCCC
T ss_conf             12498799999999980---8987658888620365118984699815609999999868870883177665----6776


Q ss_pred             CHHHHHHHHH-----HHHHH---CCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCCC--CC
Q ss_conf             3245999999-----99873---7801206323564144557898862688988998998530---------3235--77
Q gi|254780545|r  225 GASRVRDMFE-----QAKNN---SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMD---------GFES--SE  285 (647)
Q Consensus       225 g~~~vr~lf~-----~a~~~---~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~md---------g~~~--~~  285 (647)
T Consensus        98 Ta~~~~d~~~~~~~leaGalvlAd~Gv~cIDEfdk~~--------------~~d~saL~EAMEqqtVsIaKaGi~~tL~a  163 (327)
T pfam00493        98 TAAVVRDPDTGEWTLEAGALVLADGGVCCIDEFDKMN--------------EEDRVAIHEAMEQQTISIAKAGIVATLNA  163 (327)
T ss_pred             EEEEEEECCCCCEEEECCCEEECCCCEEEEECCCCCC--------------HHHHHHHHHHHHHCEEEEECCCEEEEECC
T ss_conf             1589980688836983684775589827850055588--------------76799999999868177633853897258


Q ss_pred             CEEEEEECCCCC-------------CCCHHHCCCCCCCCE-EEECHHHHHHHHHHHHH
Q ss_conf             829999629810-------------088333165642314-10001347889999999
Q gi|254780545|r  286 GVILIAATNRPD-------------VLDAALLRPGRFDRQ-ITVPNPDIVGREHILMV  329 (647)
Q Consensus       286 ~v~vi~aTn~~~-------------~lD~al~RpgRfd~~-i~~~~P~~~~r~~i~~~  329 (647)
T Consensus       164 r~sVlAaaNP~~g~yd~~~~~~~ni~Lp~~lLs--RFDLif~l~D~~~~~~D~~ia~~  219 (327)
T pfam00493       164 RCSVLAAANPIFGRYDPKKSVAENINLPPPLLS--RFDLIFVLLDKPDEEKDEELAKH  219 (327)
T ss_pred             CCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHC--CEEEEEEEECCCCHHHHHHHHHH
T ss_conf             717998527767737888898885589767745--01079884068986889999999