HHsearch alignment for GI: 254780545 and conserved domain: pfam00910
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=97.54 E-value=7.8e-05 Score=53.98 Aligned_cols=86 Identities=27% Similarity=0.434 Sum_probs=49.3
Q ss_pred EEECCCCCHHHHHHHHHHHCCCC--------CCEECCC-HHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHC
Q ss_conf 10037874258889999742469--------9702058-57886444203324599999999873780120632356414
Q gi|254780545|r 184 VLLVGPPGTGKTLLARAVAGEAN--------VPFFTIS-GSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGR 254 (647)
Q Consensus 184 ~ll~GppGtGKTlla~a~a~e~~--------~~f~~~~-~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~ 254 (647)
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~~~~~~~~wdgY~-----------------gq~vvi~DD~~~~~- 62 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSRNPDDDFWDGYT-----------------GQPVVIIDDFGQNP- 62 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCC-----------------CCEEEEEECCCCCC-
T ss_conf 989799989889999999999999837787897796788776567889-----------------98579996577788-
Q ss_pred CCCCCCCCCCHHHHHHHHHH------HHHHCCCCCC----CCEEEEEECCC
Q ss_conf 45578988626889889989------9853032357----78299996298
Q gi|254780545|r 255 HRGIGLGGGNDEREQTLNQL------LVEMDGFESS----EGVILIAATNR 295 (647)
Q Consensus 255 ~r~~~~~~~~~e~~~~ln~l------l~~mdg~~~~----~~v~vi~aTn~ 295 (647)
T Consensus 63 --~----~~~~~--~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~ 105 (105)
T pfam00910 63 --D----GPSDE--AELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF 105 (105)
T ss_pred --C----CCHHH--HHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC
T ss_conf --8----62889--9999875699838886676148884468889994799