HHsearch alignment for GI: 254780545 and conserved domain: pfam01057
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=96.03 E-value=0.0034 Score=42.13 Aligned_cols=25 Identities=44% Similarity=0.587 Sum_probs=21.8
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 3110037874258889999742469
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEAN 206 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~ 206 (647)
T Consensus 114 N~i~~~Gp~~TGks~la~ai~~~~~ 138 (271)
T pfam01057 114 NTVWFYGPASTGKTNLAQAIAHAVP 138 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 5699988987678999999998689