HHsearch alignment for GI: 254780545 and conserved domain: pfam05272
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.82 E-value=0.023 Score=36.08 Aligned_cols=143 Identities=26% Similarity=0.432 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHH
Q ss_conf 2256988985288999999999-874-33567664201233311003787425888999974246997020585788644
Q gi|254780545|r 143 GSVTFKDVAGVDEAKEDLQEIV-DFL-CDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL 220 (647)
Q Consensus 143 ~~v~f~dv~g~~~~k~~~~~~v-~~l-~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~ 220 (647)
T Consensus 13 i~~l~~~~~g~~d~~~-~~~~~~~wligaVaR~~~pG~k~d~vlvL~G~QG~gKStf~~~L~~~----~~~d~~~~~--- 84 (198)
T pfam05272 13 IETLFIDYLGAEDSLY-TREVSKLFLIGAVARVYEPGCKFDHVLILQGAQGSGKSTFLKKLGGE----WFTDSIRSF--- 84 (198)
T ss_pred HHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH----HCCCCCCCC---
T ss_conf 9999999629997599-99999999999999997789767767899889867899999997377----515655576---
Q ss_pred HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCCC---------CCEEEE
Q ss_conf 42033245999999998737801206323564144557898862688988998998-53032357---------782999
Q gi|254780545|r 221 FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV-EMDGFESS---------EGVILI 290 (647)
Q Consensus 221 ~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~-~mdg~~~~---------~~v~vi 290 (647)
T Consensus 85 -------~~kD~~~~l~~~--wi~el~El~~~~k-~---------~~~-~lK~fls~~~d~~R~pY~~~~~~~pR~~vfi 144 (198)
T pfam05272 85 -------EGKDAYEKLQGV--WIVEIAELDGFSK-A---------EVE-AIKAFITRTVDSFRAPYGRRAESFPRQCVFV 144 (198)
T ss_pred -------CCCHHHHHHHHH--HHHHHHHHHHCCH-H---------HHH-HHHHHHCCHHHCCHHCCCCCCEECCEEEEEE
T ss_conf -------773899999987--8732598751365-3---------299-9999845413123102235640065479999
Q ss_pred EECCCCCC-CCHHHCCCCCCCCEEEEC
Q ss_conf 96298100-883331656423141000
Q gi|254780545|r 291 AATNRPDV-LDAALLRPGRFDRQITVP 316 (647)
Q Consensus 291 ~aTn~~~~-lD~al~RpgRfd~~i~~~ 316 (647)
T Consensus 145 gTtN~~~~L~D~TGnR--RF~-pi~v~ 168 (198)
T pfam05272 145 GTTNRDEFLKDPTGNR--RFW-PVKVG 168 (198)
T ss_pred EECCCCCCCCCCCCCE--EEE-EEEEC
T ss_conf 9638876557999981--689-99968