HHsearch alignment for GI: 254780545 and conserved domain: pfam05729
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=97.32 E-value=0.0036 Score=41.90 Aligned_cols=139 Identities=22% Similarity=0.216 Sum_probs=64.8
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCC---------CCCEECCCHH-----------HHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 311003787425888999974246---------9970205857-----------88644420332459999999987378
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEA---------NVPFFTISGS-----------DFVELFVGVGASRVRDMFEQAKNNSP 241 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~---------~~~f~~~~~s-----------~~~~~~~g~g~~~vr~lf~~a~~~~p 241 (647)
T Consensus 1 r~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~-~~~r~~~~~~~~sl~~ll~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFF-LPCRELSRSGEASLADLLFSQWPEPAAPVSEVWAVILELPE 79 (165)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE-EEHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 98999827989899999999999986984369728999-99567077766899999998767745763789999983977
Q ss_pred HH-EEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCEEEEEECCCCCCCC--HHHCCCCCCCCEEEECH
Q ss_conf 01-2063235641445578988626889889989985-30323577829999629810088--33316564231410001
Q gi|254780545|r 242 CI-VFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE-MDGFESSEGVILIAATNRPDVLD--AALLRPGRFDRQITVPN 317 (647)
Q Consensus 242 ~i-ifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~-mdg~~~~~~v~vi~aTn~~~~lD--~al~RpgRfd~~i~~~~ 317 (647)
T Consensus 80 k~L~ilDGlDE~~~~~~~~~~------~~~~~~~l~~ll~~~~lp~~~vli--TsRp~~~~~l~~~~~---~~~~~ei~G 148 (165)
T pfam05729 80 RVLLILDGLDELASDLGQLDG------PLPVLTLLSSLLRKKLLPGASLLL--TSRPDALRDLRRGLE---EPRYLEVLG 148 (165)
T ss_pred CEEEEECCHHHHCCCCCCCCC------CCCHHHHHHHHHHHCCCCCCEEEE--EECCCHHHHHHHHCC---CCCEEEECC
T ss_conf 289996484551444356444------577999999998415278864999--968037988577648---871899889
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 347889999999854
Q gi|254780545|r 318 PDIVGREHILMVHSR 332 (647)
Q Consensus 318 P~~~~r~~i~~~~~~ 332 (647)
T Consensus 149 Fs~~~~~~yi~~~F~ 163 (165)
T pfam05729 149 FSEEDRKQYVRKYFS 163 (165)
T ss_pred CCHHHHHHHHHHHCC
T ss_conf 999999999998679