HHsearch alignment for GI: 254780545 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.88 E-value=2.9e-09 Score=85.98 Aligned_cols=81 Identities=36% Similarity=0.575 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC--CCEECCCHHHHHHHHHHCC
Q ss_conf 88985288999999999874335676642012333110037874258889999742469--9702058578864442033
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN--VPFFTISGSDFVELFVGVG 225 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~--~~f~~~~~s~~~~~~~g~g 225 (647)
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~-K~------aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~kKT 96 (395)
T pfam06068 24 EGLVGQEKAREAAGVIVEMIKEG-KI------AGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKT 96 (395)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHC-CC------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCCHH
T ss_conf 77545499999989999999727-75------773899877999888999999999748799734500111212565488
Q ss_pred HHHHHHHHHHH
Q ss_conf 24599999999
Q gi|254780545|r 226 ASRVRDMFEQA 236 (647)
Q Consensus 226 ~~~vr~lf~~a 236 (647)
T Consensus 97 E~-L~qafRrs 106 (395)
T pfam06068 97 EA-LTQAFRKA 106 (395)
T ss_pred HH-HHHHHHHH
T ss_conf 99-99999887