HHsearch alignment for GI: 254780545 and conserved domain: pfam06068

>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.88  E-value=2.9e-09  Score=85.98  Aligned_cols=81  Identities=36%  Similarity=0.575  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC--CCEECCCHHHHHHHHHHCC
Q ss_conf             88985288999999999874335676642012333110037874258889999742469--9702058578864442033
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN--VPFFTISGSDFVELFVGVG  225 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~--~~f~~~~~s~~~~~~~g~g  225 (647)
T Consensus        24 ~GlVGQ~~AReAagiiv~mIk~~-K~------aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEvyS~E~kKT   96 (395)
T pfam06068        24 EGLVGQEKAREAAGVIVEMIKEG-KI------AGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKT   96 (395)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHC-CC------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEEECCCCCHH
T ss_conf             77545499999989999999727-75------773899877999888999999999748799734500111212565488


Q ss_pred             HHHHHHHHHHH
Q ss_conf             24599999999
Q gi|254780545|r  226 ASRVRDMFEQA  236 (647)
Q Consensus       226 ~~~vr~lf~~a  236 (647)
T Consensus        97 E~-L~qafRrs  106 (395)
T pfam06068        97 EA-LTQAFRKA  106 (395)
T ss_pred             HH-HHHHHHHH
T ss_conf             99-99999887