HHsearch alignment for GI: 254780545 and conserved domain: pfam06745

>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.

Probab=97.64  E-value=0.00056  Score=47.77  Aligned_cols=40  Identities=40%  Similarity=0.559  Sum_probs=27.6

Q ss_pred             HHHCCCCCC--EEECCCCCHHHHHHHHHHH----CCCCCCEECCCH
Q ss_conf             420123331--1003787425888999974----246997020585
Q gi|254780545|r  175 RLGGRIPHG--VLLVGPPGTGKTLLARAVA----GEANVPFFTISG  214 (647)
Q Consensus       175 ~~g~~~p~g--~ll~GppGtGKTlla~a~a----~e~~~~f~~~~~  214 (647)
T Consensus        11 ~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~   56 (231)
T pfam06745        11 ILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTL   56 (231)
T ss_pred             HCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             3169982996999985897259999999999999865896899981