HHsearch alignment for GI: 254780545 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.25 E-value=1.1e-11 Score=103.47 Aligned_cols=101 Identities=28% Similarity=0.431 Sum_probs=74.1
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCC---CEECCCHHHHHH-----HHHHC-----CHHHHHHHHHHHHHHCCHHEEHHH
Q ss_conf 31100378742588899997424699---702058578864-----44203-----324599999999873780120632
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANV---PFFTISGSDFVE-----LFVGV-----GASRVRDMFEQAKNNSPCIVFVDE 248 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~---~f~~~~~s~~~~-----~~~g~-----g~~~vr~lf~~a~~~~p~iifiDe 248 (647)
T Consensus 4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~VillDE 83 (168)
T pfam07724 4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLIDE 83 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHH
T ss_conf 79998898998999999999999679853448855756542569998705899872624265078999838984898657
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCC-------CCEEEEEECCCC
Q ss_conf 35641445578988626889889989985303--2357-------782999962981
Q gi|254780545|r 249 IDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG--FESS-------EGVILIAATNRP 296 (647)
Q Consensus 249 ida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg--~~~~-------~~v~vi~aTn~~ 296 (647)
T Consensus 84 IeKa~~--------------~V~~~LL~ild~g~~~d~~g~~v~~~n~i~i~Tsn~g 126 (168)
T pfam07724 84 IEKAHP--------------GVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFG 126 (168)
T ss_pred HHHHCH--------------HHHHHHHHHCCCCCEECCCCCEEECCCEEEEECCCCC
T ss_conf 766589--------------9999999870587063699967844647999768737