HHsearch alignment for GI: 254780545 and conserved domain: pfam07728

>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.31  E-value=1.9e-12  Score=109.09  Aligned_cols=110  Identities=37%  Similarity=0.456  Sum_probs=72.9

Q ss_pred             CEEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHHH--HHHH------CCHHHHHHHHHHHHHHCCHHEEHHHHHHHH
Q ss_conf             11003787425888999974246-99702058578864--4420------332459999999987378012063235641
Q gi|254780545|r  183 GVLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFVE--LFVG------VGASRVRDMFEQAKNNSPCIVFVDEIDAVG  253 (647)
Q Consensus       183 g~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~~--~~~g------~g~~~vr~lf~~a~~~~p~iifiDeida~~  253 (647)
T Consensus         1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~-~g~vl~lDEin~a~   79 (139)
T pfam07728         1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAAR-EGEIAVLDEINRAN   79 (139)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCCC-CCCEEEECCHHHCC
T ss_conf             98999899756999999999980798311121465565222057342379935781551410101-28689963434489


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCC----------------CCCCCEEEEEECCCCC----CCCHHHCCCCCC
Q ss_conf             4455789886268898899899853032----------------3577829999629810----088333165642
Q gi|254780545|r  254 RHRGIGLGGGNDEREQTLNQLLVEMDGF----------------ESSEGVILIAATNRPD----VLDAALLRPGRF  309 (647)
Q Consensus       254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg~----------------~~~~~v~vi~aTn~~~----~lD~al~RpgRf  309 (647)
T Consensus        80 -----------~---~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~~~g~~~l~~Al~~--RF  139 (139)
T pfam07728        80 -----------P---DVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPLDRGLNELSPALRS--RF  139 (139)
T ss_pred             -----------H---HHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHC--CC
T ss_conf             -----------9---999999999748969836897273366667899969999758965478009989975--09