HHsearch alignment for GI: 254780545 and conserved domain: pfam07728
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.31 E-value=1.9e-12 Score=109.09 Aligned_cols=110 Identities=37% Similarity=0.456 Sum_probs=72.9
Q ss_pred CEEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHHH--HHHH------CCHHHHHHHHHHHHHHCCHHEEHHHHHHHH
Q ss_conf 11003787425888999974246-99702058578864--4420------332459999999987378012063235641
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFVE--LFVG------VGASRVRDMFEQAKNNSPCIVFVDEIDAVG 253 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~~--~~~g------~g~~~vr~lf~~a~~~~p~iifiDeida~~ 253 (647)
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~-~g~vl~lDEin~a~ 79 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAAR-EGEIAVLDEINRAN 79 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCCC-CCCEEEECCHHHCC
T ss_conf 98999899756999999999980798311121465565222057342379935781551410101-28689963434489
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCC----------------CCCCCEEEEEECCCCC----CCCHHHCCCCCC
Q ss_conf 4455789886268898899899853032----------------3577829999629810----088333165642
Q gi|254780545|r 254 RHRGIGLGGGNDEREQTLNQLLVEMDGF----------------ESSEGVILIAATNRPD----VLDAALLRPGRF 309 (647)
Q Consensus 254 ~~r~~~~~~~~~e~~~~ln~ll~~mdg~----------------~~~~~v~vi~aTn~~~----~lD~al~RpgRf 309 (647)
T Consensus 80 -----------~---~v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~~~~g~~~l~~Al~~--RF 139 (139)
T pfam07728 80 -----------P---DVLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNPLDRGLNELSPALRS--RF 139 (139)
T ss_pred -----------H---HHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHC--CC
T ss_conf -----------9---999999999748969836897273366667899969999758965478009989975--09