HHsearch alignment for GI: 254780545 and conserved domain: pfam08298
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.66 E-value=6.6e-05 Score=54.52 Aligned_cols=84 Identities=27% Similarity=0.489 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCHHHHHHHHHHHCCC-CCCEECCCHHHHHHHHH
Q ss_conf 569889852889999999998743356766420123331-1003787425888999974246-99702058578864442
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG-VLLVGPPGTGKTLLARAVAGEA-NVPFFTISGSDFVELFV 222 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g-~ll~GppGtGKTlla~a~a~e~-~~~f~~~~~s~~~~~~~ 222 (647)
T Consensus 55 ~~F~dffGme~~---i~~iV~~~ks----AA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y~~Y~i~gsPm~e~PL 127 (358)
T pfam08298 55 PAFADFFGMEET---IERIVNYFRH----AAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELVPIYALKGSPVFESPL 127 (358)
T ss_pred CCCCCCCCHHHH---HHHHHHHHHH----HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 542320015999---9999999999----972367210589997789877589999999872058648844897778985
Q ss_pred HC-CHHHHHHHHHH
Q ss_conf 03-32459999999
Q gi|254780545|r 223 GV-GASRVRDMFEQ 235 (647)
Q Consensus 223 g~-g~~~vr~lf~~ 235 (647)
T Consensus 128 ~L~~p~~~r~~le~ 141 (358)
T pfam08298 128 HLFNPHHLRDILED 141 (358)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 47786775999998