RPSBLAST alignment for GI: 254780545 and conserved domain: TIGR00635
>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. Length = 305
Score = 41.9 bits (99), Expect = 6e-04
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 20/77 (25%)
Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFVELFVGVGASRVRDMFEQAK 237
+LL GPPG GKT LA +A E V SG D + + +
Sbjct: 33 LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL----------EEG 82
Query: 238 NNSPCIVFVDEIDAVGR 254
+ ++F+DEI +
Sbjct: 83 D----VLFIDEIHRLSP 95