RPSBLAST alignment for GI: 254780545 and conserved domain: TIGR00635

>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. Length = 305
 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 20/77 (25%)

Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISG------SDFVELFVGVGASRVRDMFEQAK 237
           +LL GPPG GKT LA  +A E  V     SG       D   +   +          +  
Sbjct: 33  LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL----------EEG 82

Query: 238 NNSPCIVFVDEIDAVGR 254
           +    ++F+DEI  +  
Sbjct: 83  D----VLFIDEIHRLSP 95