RPSBLAST alignment for GI: 254780545 and conserved domain: TIGR01243

>gnl|CDD|162267 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733
 Score =  215 bits (548), Expect = 4e-56
 Identities = 111/231 (48%), Positives = 152/231 (65%), Gaps = 4/231 (1%)

Query: 142 VGSVTFKDVAGVDEAKEDLQEIVDF-LCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARA 200
           V  VT++D+ G+ EAKE ++E+V+  +  P+ F+ LG   P GVLL GPPGTGKTLLA+A
Sbjct: 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKA 231

Query: 201 VAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGL 260
           VA EA   F +I+G + +  + G    R+R++F++A+ N+P I+F+DEIDA+   R    
Sbjct: 232 VANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT 291

Query: 261 GGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDI 320
           G   +  ++ + QLL  MDG +    VI+I ATNRPD LD AL RPGRFDR+I +  PD 
Sbjct: 292 G---EVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDK 348

Query: 321 VGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR 371
             R+ IL VH+RN+PLA +V L  +A  T GF GADL  L  EAA+ A RR
Sbjct: 349 RARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRR 399