RPSBLAST alignment for GI: 254780545 and conserved domain: TIGR03689

>gnl|CDD|163401 TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. Length = 512
 Score =  139 bits (352), Expect = 2e-33
 Identities = 89/277 (32%), Positives = 139/277 (50%), Gaps = 25/277 (9%)

Query: 142 VGSVTFKDVAGVDEAKEDLQEIVD--FLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLAR 199
           V  VT+ D+ G+D   E +++ V+  FL  P+ ++    + P GVLL GPPG GKTL+A+
Sbjct: 176 VPDVTYADIGGLDSQIEQIRDAVELPFL-HPELYREYDLKPPKGVLLYGPPGCGKTLIAK 234

Query: 200 AVA------GEANVP----FFTISGSDFVELFVGVGASRVRDMFEQAK----NNSPCIVF 245
           AVA        A       F  I G + +  +VG    ++R +F++A+    +  P IVF
Sbjct: 235 AVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVF 294

Query: 246 VDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR 305
            DE+D++ R RG G+   +D     + QLL E+DG ES + VI+I A+NR D++D A+LR
Sbjct: 295 FDEMDSIFRTRGSGVS--SDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILR 352

Query: 306 PGRFDRQITVPNPDIVGREHILMVH-SRNVPLAPNVILKTIARGTPGFSGADLRNLVNEA 364
           PGR D +I +  PD      I   + + ++PL  ++      R       A L     + 
Sbjct: 353 PGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREAT---AAALIQRAVD- 408

Query: 365 ALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTE 401
            L A     R V +    +   ++L   +  S AM  
Sbjct: 409 HLYATSEENRYVEVTY-ANGSTEVLYFKDFVSGAMIA 444