RPSBLAST alignment for GI: 254780545 and conserved domain: KOG0733

>gnl|CDD|35952 KOG0733, KOG0733, KOG0733, Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 802
 Score =  222 bits (568), Expect = 2e-58
 Identities = 107/289 (37%), Positives = 157/289 (54%), Gaps = 9/289 (3%)

Query: 126 GAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVL 185
            A G  +   + L     +V+F D+ G+D+   +L E++  +  P+ F  LG R P GVL
Sbjct: 168 LARGILRQFVEGLEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVL 227

Query: 186 LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVF 245
           L GPPG GKT LA A+AGE  VPF +IS  + V    G    ++R++F+QAK+N+PCIVF
Sbjct: 228 LHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVF 287

Query: 246 VDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSE----GVILIAATNRPDVLDA 301
           +DEIDA+   R        +   + + QLL  MD   + +     V++I ATNRPD LD 
Sbjct: 288 IDEIDAITPKRE---EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344

Query: 302 ALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLV 361
           AL R GRFDR+I +  P    RE IL +  R + L+ +   K +A+ TPGF GADL  L 
Sbjct: 345 ALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALC 404

Query: 362 NEAALMAARR--NRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITA 408
            EAA +A +R  ++    + +   ++D     AE   +++         
Sbjct: 405 REAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERP 453