RPSBLAST alignment for GI: 254780545 and conserved domain: KOG0733
>gnl|CDD|35952 KOG0733, KOG0733, KOG0733, Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 802
Score = 222 bits (568), Expect = 2e-58
Identities = 107/289 (37%), Positives = 157/289 (54%), Gaps = 9/289 (3%)
Query: 126 GAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVL 185
A G + + L +V+F D+ G+D+ +L E++ + P+ F LG R P GVL
Sbjct: 168 LARGILRQFVEGLEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVL 227
Query: 186 LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVF 245
L GPPG GKT LA A+AGE VPF +IS + V G ++R++F+QAK+N+PCIVF
Sbjct: 228 LHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVF 287
Query: 246 VDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSE----GVILIAATNRPDVLDA 301
+DEIDA+ R + + + QLL MD + + V++I ATNRPD LD
Sbjct: 288 IDEIDAITPKRE---EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344
Query: 302 ALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLV 361
AL R GRFDR+I + P RE IL + R + L+ + K +A+ TPGF GADL L
Sbjct: 345 ALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALC 404
Query: 362 NEAALMAARR--NRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITA 408
EAA +A +R ++ + + ++D AE +++
Sbjct: 405 REAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERP 453