BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus
Liberibacter asiaticus str. psy62]
         (647 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 1327 bits (3434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/647 (100%), Positives = 647/647 (100%)

Query: 1   MIALCLIASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESS 60
           MIALCLIASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESS
Sbjct: 1   MIALCLIASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESS 60

Query: 61  FQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQ 120
           FQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQ
Sbjct: 61  FQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQ 120

Query: 121 GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI 180
           GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI
Sbjct: 121 GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI 180

Query: 181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS 240
           PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS
Sbjct: 181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS 240

Query: 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300
           PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD
Sbjct: 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300

Query: 301 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL 360
           AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL
Sbjct: 301 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL 360

Query: 361 VNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACH 420
           VNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACH
Sbjct: 361 VNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACH 420

Query: 421 VPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN 480
           VPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN
Sbjct: 421 VPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN 480

Query: 481 VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQK 540
           VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQK
Sbjct: 481 VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQK 540

Query: 541 IDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSED 600
           IDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSED
Sbjct: 541 IDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSED 600

Query: 601 DGVALCASVPQAGVQEAEVSCSEEKDNENIDSSNTDDLEKEDTKSVQ 647
           DGVALCASVPQAGVQEAEVSCSEEKDNENIDSSNTDDLEKEDTKSVQ
Sbjct: 601 DGVALCASVPQAGVQEAEVSCSEEKDNENIDSSNTDDLEKEDTKSVQ 647


>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 437

 Score = 45.1 bits (105), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASR-VRDMFEQAK 237
           +P  +LLVGP G GKT ++R +A  A  PF  +  + F E+ +VG    + +RD+ + A 
Sbjct: 52  MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111

Query: 238 N 238
           N
Sbjct: 112 N 112


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 40.8 bits (94), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASRVRDMFEQAKNNS-- 240
           +LLVGP G GKT LA+ +A   +VPF     +   E  +VG     +     QA + +  
Sbjct: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175

Query: 241 ---PCIVFVDEIDAVGR 254
                IV++DE+D + R
Sbjct: 176 RAQRGIVYIDEVDKISR 192


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 40.4 bits (93), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 16/115 (13%)

Query: 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV 207
           +D  G+++ KE    I+++L    +  +  G I   +  VGPPG GKT LA+++A     
Sbjct: 339 QDHFGLEKVKE---RIIEYLAVQMRVIKNKGLI---LCFVGPPGVGKTSLAQSIAKATGR 392

Query: 208 PFFTIS-GSDFVE--------LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG 253
            +  +S G  + E         ++G    R+    ++AK ++P ++ +DEID +G
Sbjct: 393 QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMG 446


>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 334

 Score = 37.7 bits (86), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISG 214
           VL VGPPG GKT LA+ VA E  V F + SG
Sbjct: 57  VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 29.3 bits (64), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 15/88 (17%)

Query: 176 LGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDFVELFVG--VGASRVR 230
           L  R  +  +L+G PG GKT +   +A      ++P  ++ G   + L +G  +  ++ R
Sbjct: 194 LSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIP-ESLKGKRLMALDMGALIAGAKFR 252

Query: 231 DMFEQAKNNSPC---------IVFVDEI 249
             FE+   +  C         I+F+DE+
Sbjct: 253 GEFEERLKSLLCEIRSEDGEIILFIDEL 280



 Score = 25.0 bits (53), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 151 AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG-VLLVGPPGTGKTLLARAVA 202
           A V+     L+     L DPQ+        P G  + +GP G GKT L +++A
Sbjct: 575 AAVESVSNALRRFRAGLQDPQR--------PMGSFMFLGPTGVGKTELVKSLA 619


>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 798

 Score = 28.9 bits (63), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 24/122 (19%)

Query: 158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVP------ 208
           E++   +  LC   K         +  L VG PG GKT +A   A +     VP      
Sbjct: 211 EEINRTIQILCRRSK---------NNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGA 261

Query: 209 -FFTISGSDFV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAV---GRHRGIGLGG 262
             F++   + +    + G    R++ + ++ ++ +  I+++DEI  +   G   GI +  
Sbjct: 262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDA 321

Query: 263 GN 264
            N
Sbjct: 322 SN 323



 Score = 28.9 bits (63), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 31/130 (23%)

Query: 138 LSGNVGSVTFKDVAGVDEAKEDLQEIVDF----LCDPQKFKRLGGRIPHGVLLV-GPPGT 192
           L  N+G+V +    G +EA + L   +      L DP K        P G  +  GP G 
Sbjct: 471 LEKNLGTVVY----GQEEAIKKLSSSIKIARAGLSDPNK--------PIGCYVFSGPTGV 518

Query: 193 GKTLLARAVAGEANVPFFTISGSDFVEL------------FVGVGASRVRDMFEQAKNNS 240
           GKT +++ +A    V       S+++E             +VG G   +  + +    N 
Sbjct: 519 GKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI--LADSVDQNP 576

Query: 241 PCIVFVDEID 250
             +V +DEI+
Sbjct: 577 YSVVLLDEIE 586


>gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 401

 Score = 28.1 bits (61), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV 276
           I ++DE+ AVG H     G G  ERE  +N++ +
Sbjct: 209 ITYIDEVHAVGIHG--SCGAGISEREGIMNRITI 240


>gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 207

 Score = 27.7 bits (60), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 112 WMFLMRQIQGGGARGAMG 129
           W  L++ +QG GAR AMG
Sbjct: 71  WFMLLQSVQGVGARVAMG 88


>537021.9.peg.472_1 
          Length = 369

 Score = 27.3 bits (59), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEAN 206
            GRI    +L G  G GKT  AR +A   N
Sbjct: 17  SGRIAQSYMLSGTRGIGKTTTARIIARSLN 46


>gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 201

 Score = 27.3 bits (59), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 184 VLLVGPPGTGKTLLARAVAGEANVP 208
           ++ +GPPG+GK   A  ++ + NVP
Sbjct: 3   IIFLGPPGSGKGTQACRLSQKLNVP 27


>gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 364

 Score = 26.6 bits (57), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 398 AMTEEEKKITAYHEAGHAVVACHVPKADPLHKAT 431
           ++TE ++ ITAY E GH ++AC V  +  + + T
Sbjct: 98  SLTEGDQMITAYREHGH-ILACGVDASKIMAELT 130


>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score = 26.6 bits (57), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 185 LLVGPPGTGKTLLARAVA 202
           L+V PP TGKT+L + +A
Sbjct: 178 LIVAPPRTGKTILLQNIA 195


>gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 250

 Score = 25.8 bits (55), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 45  VIGTHITGFYVNGESSFQTYMPLVGSKLLDKLQSKDIEISS---RPVN 89
           V+   I+GFYVNG    + ++P     LL K     IE+SS   RPV+
Sbjct: 125 VLSVVISGFYVNGLGFLRLFIP-KDIPLLIKPLVCFIEVSSFLFRPVS 171


>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 246

 Score = 25.8 bits (55), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFT 211
           V+LVGP G+GK+ LA   + ++    F+
Sbjct: 67  VILVGPSGSGKSCLANIWSDKSRSTRFS 94


>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 539

 Score = 25.4 bits (54), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 166 FLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204
            L D   FK   G I   V ++GP G GKT L R + G+
Sbjct: 331 LLIDNLSFKLPPGGI---VGVIGPNGAGKTTLFRMLTGD 366


>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
           ABC transporter protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 240

 Score = 25.0 bits (53), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 184 VLLVGPPGTGKTLLARAVAG 203
           V L+GP G+GK+ +A+ + G
Sbjct: 39  VTLIGPNGSGKSTIAKLITG 58


>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 186

 Score = 25.0 bits (53), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 10/49 (20%)

Query: 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVR 230
           H  +L+G  G GKT +A+ V          +  S+++ + VGV   R R
Sbjct: 3   HIFVLIGASGVGKTTIAKQV----------VLNSEYLVMPVGVTTRRPR 41


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 25.0 bits (53), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGE 204
           K    RI +G  + +VGP G GKT L + + G+
Sbjct: 301 KDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGK 333


>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 438

 Score = 24.3 bits (51), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 20/106 (18%)

Query: 186 LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRD------MFEQAKNN 239
           L+G  G+GK+ L R +AG        +S S    LF G    +++D      +  Q    
Sbjct: 48  LLGRSGSGKSTLLRIIAG-------LVSPSSGQVLFKG---KKIKDPPKDISVVFQTFAL 97

Query: 240 SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL-LVEMDGFESS 284
            P +  ++ ++   + +GI      + R++ L+ + L+ +DGFES+
Sbjct: 98  FPWLTVLENVELGLKAKGI---DKEERRKRALSAIDLIGLDGFESA 140


>gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 185

 Score = 23.9 bits (50), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 433 IPRGRALGMVMQLPEADRHSTTYVWMTSRLTI 464
           +  G+ALG V++     ++ST Y W+   L +
Sbjct: 33  VANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64


>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 321

 Score = 23.9 bits (50), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 148 KDVAGVDEAKEDLQEIVDFLCDP--QKFKRLGGRIPHGVLLVGPPGTGKT 195
           KDV+ V     D+ E++  +  P  + F       PH +L+VG  G GKT
Sbjct: 77  KDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,237
Number of Sequences: 1233
Number of extensions: 17067
Number of successful extensions: 78
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 29
length of query: 647
length of database: 328,796
effective HSP length: 80
effective length of query: 567
effective length of database: 230,156
effective search space: 130498452
effective search space used: 130498452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)