BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] (647 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 1327 bits (3434), Expect = 0.0, Method: Compositional matrix adjust. Identities = 647/647 (100%), Positives = 647/647 (100%) Query: 1 MIALCLIASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESS 60 MIALCLIASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESS Sbjct: 1 MIALCLIASFSIFQAPSAGQDGVQDISYSQFIKDVDAGRVRKISVIGTHITGFYVNGESS 60 Query: 61 FQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQ 120 FQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQ Sbjct: 61 FQTYMPLVGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFPLVLVVLVWMFLMRQIQ 120 Query: 121 GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI 180 GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI Sbjct: 121 GGGARGAMGFGKSKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI 180 Query: 181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS 240 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS Sbjct: 181 PHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS 240 Query: 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD Sbjct: 241 PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLD 300 Query: 301 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL 360 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL Sbjct: 301 AALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNL 360 Query: 361 VNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACH 420 VNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACH Sbjct: 361 VNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACH 420 Query: 421 VPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN 480 VPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN Sbjct: 421 VPKADPLHKATIIPRGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTFGEDN 480 Query: 481 VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQK 540 VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQK Sbjct: 481 VTSGAMSDIEYATKLARVMVTQFGFSNLLGKVSYEEGQQEALLSHPVSRPRSISEETAQK 540 Query: 541 IDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSED 600 IDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSED Sbjct: 541 IDKEVFRLIEEAYQKAKSIIQEKNDNFVAIAEALLEYETLSGKEIASLIRGEKISRPSED 600 Query: 601 DGVALCASVPQAGVQEAEVSCSEEKDNENIDSSNTDDLEKEDTKSVQ 647 DGVALCASVPQAGVQEAEVSCSEEKDNENIDSSNTDDLEKEDTKSVQ Sbjct: 601 DGVALCASVPQAGVQEAEVSCSEEKDNENIDSSNTDDLEKEDTKSVQ 647 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 45.1 bits (105), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%) Query: 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASR-VRDMFEQAK 237 +P +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 Query: 238 N 238 N Sbjct: 112 N 112 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 40.8 bits (94), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASRVRDMFEQAKNNS-- 240 +LLVGP G GKT LA+ +A +VPF + E +VG + QA + + Sbjct: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVE 175 Query: 241 ---PCIVFVDEIDAVGR 254 IV++DE+D + R Sbjct: 176 RAQRGIVYIDEVDKISR 192 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 40.4 bits (93), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 16/115 (13%) Query: 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV 207 +D G+++ KE I+++L + + G I + VGPPG GKT LA+++A Sbjct: 339 QDHFGLEKVKE---RIIEYLAVQMRVIKNKGLI---LCFVGPPGVGKTSLAQSIAKATGR 392 Query: 208 PFFTIS-GSDFVE--------LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG 253 + +S G + E ++G R+ ++AK ++P ++ +DEID +G Sbjct: 393 QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMG 446 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 37.7 bits (86), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 21/31 (67%) Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFTISG 214 VL VGPPG GKT LA+ VA E V F + SG Sbjct: 57 VLFVGPPGLGKTTLAQVVARELGVNFRSTSG 87 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 29.3 bits (64), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 15/88 (17%) Query: 176 LGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDFVELFVG--VGASRVR 230 L R + +L+G PG GKT + +A ++P ++ G + L +G + ++ R Sbjct: 194 LSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIP-ESLKGKRLMALDMGALIAGAKFR 252 Query: 231 DMFEQAKNNSPC---------IVFVDEI 249 FE+ + C I+F+DE+ Sbjct: 253 GEFEERLKSLLCEIRSEDGEIILFIDEL 280 Score = 25.0 bits (53), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Query: 151 AGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHG-VLLVGPPGTGKTLLARAVA 202 A V+ L+ L DPQ+ P G + +GP G GKT L +++A Sbjct: 575 AAVESVSNALRRFRAGLQDPQR--------PMGSFMFLGPTGVGKTELVKSLA 619 >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 28.9 bits (63), Expect = 0.29, Method: Compositional matrix adjust. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 24/122 (19%) Query: 158 EDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVP------ 208 E++ + LC K + L VG PG GKT +A A + VP Sbjct: 211 EEINRTIQILCRRSK---------NNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGA 261 Query: 209 -FFTISGSDFV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAV---GRHRGIGLGG 262 F++ + + + G R++ + ++ ++ + I+++DEI + G GI + Sbjct: 262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDA 321 Query: 263 GN 264 N Sbjct: 322 SN 323 Score = 28.9 bits (63), Expect = 0.29, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 31/130 (23%) Query: 138 LSGNVGSVTFKDVAGVDEAKEDLQEIVDF----LCDPQKFKRLGGRIPHGVLLV-GPPGT 192 L N+G+V + G +EA + L + L DP K P G + GP G Sbjct: 471 LEKNLGTVVY----GQEEAIKKLSSSIKIARAGLSDPNK--------PIGCYVFSGPTGV 518 Query: 193 GKTLLARAVAGEANVPFFTISGSDFVEL------------FVGVGASRVRDMFEQAKNNS 240 GKT +++ +A V S+++E +VG G + + + N Sbjct: 519 GKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGI--LADSVDQNP 576 Query: 241 PCIVFVDEID 250 +V +DEI+ Sbjct: 577 YSVVLLDEIE 586 >gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 401 Score = 28.1 bits (61), Expect = 0.43, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 243 IVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLV 276 I ++DE+ AVG H G G ERE +N++ + Sbjct: 209 ITYIDEVHAVGIHG--SCGAGISEREGIMNRITI 240 >gi|254780553|ref|YP_003064966.1| Holliday junction DNA helicase RuvA [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 27.7 bits (60), Expect = 0.54, Method: Compositional matrix adjust. Identities = 10/18 (55%), Positives = 13/18 (72%) Query: 112 WMFLMRQIQGGGARGAMG 129 W L++ +QG GAR AMG Sbjct: 71 WFMLLQSVQGVGARVAMG 88 >537021.9.peg.472_1 Length = 369 Score = 27.3 bits (59), Expect = 0.69, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 15/30 (50%) Query: 177 GGRIPHGVLLVGPPGTGKTLLARAVAGEAN 206 GRI +L G G GKT AR +A N Sbjct: 17 SGRIAQSYMLSGTRGIGKTTTARIIARSLN 46 >gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 201 Score = 27.3 bits (59), Expect = 0.75, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 184 VLLVGPPGTGKTLLARAVAGEANVP 208 ++ +GPPG+GK A ++ + NVP Sbjct: 3 IIFLGPPGSGKGTQACRLSQKLNVP 27 >gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 26.6 bits (57), Expect = 1.3, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 398 AMTEEEKKITAYHEAGHAVVACHVPKADPLHKAT 431 ++TE ++ ITAY E GH ++AC V + + + T Sbjct: 98 SLTEGDQMITAYREHGH-ILACGVDASKIMAELT 130 >gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust. Identities = 10/18 (55%), Positives = 14/18 (77%) Query: 185 LLVGPPGTGKTLLARAVA 202 L+V PP TGKT+L + +A Sbjct: 178 LIVAPPRTGKTILLQNIA 195 >gi|254781088|ref|YP_003065501.1| F0F1 ATP synthase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 250 Score = 25.8 bits (55), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Query: 45 VIGTHITGFYVNGESSFQTYMPLVGSKLLDKLQSKDIEISS---RPVN 89 V+ I+GFYVNG + ++P LL K IE+SS RPV+ Sbjct: 125 VLSVVISGFYVNGLGFLRLFIP-KDIPLLIKPLVCFIEVSSFLFRPVS 171 >gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 25.8 bits (55), Expect = 2.2, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 18/28 (64%) Query: 184 VLLVGPPGTGKTLLARAVAGEANVPFFT 211 V+LVGP G+GK+ LA + ++ F+ Sbjct: 67 VILVGPSGSGKSCLANIWSDKSRSTRFS 94 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 25.4 bits (54), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 166 FLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204 L D FK G I V ++GP G GKT L R + G+ Sbjct: 331 LLIDNLSFKLPPGGI---VGVIGPNGAGKTTLFRMLTGD 366 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 25.0 bits (53), Expect = 3.4, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 15/20 (75%) Query: 184 VLLVGPPGTGKTLLARAVAG 203 V L+GP G+GK+ +A+ + G Sbjct: 39 VTLIGPNGSGKSTIAKLITG 58 >gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 25.0 bits (53), Expect = 4.2, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 10/49 (20%) Query: 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVR 230 H +L+G G GKT +A+ V + S+++ + VGV R R Sbjct: 3 HIFVLIGASGVGKTTIAKQV----------VLNSEYLVMPVGVTTRRPR 41 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 25.0 bits (53), Expect = 4.2, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Query: 174 KRLGGRIPHG--VLLVGPPGTGKTLLARAVAGE 204 K RI +G + +VGP G GKT L + + G+ Sbjct: 301 KDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGK 333 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 24.3 bits (51), Expect = 6.3, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 20/106 (18%) Query: 186 LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRD------MFEQAKNN 239 L+G G+GK+ L R +AG +S S LF G +++D + Q Sbjct: 48 LLGRSGSGKSTLLRIIAG-------LVSPSSGQVLFKG---KKIKDPPKDISVVFQTFAL 97 Query: 240 SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL-LVEMDGFESS 284 P + ++ ++ + +GI + R++ L+ + L+ +DGFES+ Sbjct: 98 FPWLTVLENVELGLKAKGI---DKEERRKRALSAIDLIGLDGFESA 140 >gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62] Length = 185 Score = 23.9 bits (50), Expect = 7.7, Method: Compositional matrix adjust. Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 433 IPRGRALGMVMQLPEADRHSTTYVWMTSRLTI 464 + G+ALG V++ ++ST Y W+ L + Sbjct: 33 VANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64 >gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 23.9 bits (50), Expect = 7.8, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Query: 148 KDVAGVDEAKEDLQEIVDFLCDP--QKFKRLGGRIPHGVLLVGPPGTGKT 195 KDV+ V D+ E++ + P + F PH +L+VG G GKT Sbjct: 77 KDVS-VQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKT 125 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.135 0.380 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 400,237 Number of Sequences: 1233 Number of extensions: 17067 Number of successful extensions: 78 Number of sequences better than 100.0: 24 Number of HSP's better than 100.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 29 length of query: 647 length of database: 328,796 effective HSP length: 80 effective length of query: 567 effective length of database: 230,156 effective search space: 130498452 effective search space used: 130498452 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 41 (20.4 bits)