HHsearch alignment for GI: 254780546 and conserved domain: COG0482

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=99.39  E-value=2.6e-12  Score=106.09  Aligned_cols=172  Identities=16%  Similarity=0.188  Sum_probs=121.7

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-----CCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             998399996694248999999999998648997299999966779-----878468999999999871898899997504
Q gi|254780546|r   18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVSDVCSRLRIAHSVVSWKNS   92 (423)
Q Consensus        18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl-----r~~s~~e~~~v~~~~~~lgi~~~~~~~~~~   92 (423)
T Consensus         2 ~~~kV~v~mSGGVDSSVaA~lLk~Q-------GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~   74 (356)
T COG0482           2 KKKKVLVGMSGGVDSSVAAYLLKEQ-------GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKE   74 (356)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-------CCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_conf             8767999905777899999999976-------974999999964147888677256789999999980995599846899


Q ss_pred             ---------------CCCCCCHHHH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHH---HHHHHHHHCCCCCCCCCCCCC
Q ss_conf             ---------------7877803788-854555543200123442012345666566---899998623654443322357
Q gi|254780546|r   93 ---------------KPQTGLMAAA-REARYALISEHAKTINATLIMTAHTFDDQL---ETVYMRSQRDYAEKGMGLSGM  153 (423)
Q Consensus        93 ---------------~~~~~~~~~a-r~~r~~~~~~~~~~~~~~~l~~ah~~dD~~---Et~l~rl~r~sg~~g~~l~~~  153 (423)
T Consensus        75 y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~  154 (356)
T COG0482          75 FWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYAL  154 (356)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHEECCC
T ss_conf             88888887789985799999651048788999999999975998578744676543776000146787420300020126


Q ss_pred             CCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             64100357968710121042899999899818932026678642210
Q gi|254780546|r  154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE  200 (423)
Q Consensus       154 ~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~  200 (423)
T Consensus       155 ~~~ql----~~~lFPlG~l~K~evR~iA~~~gL~~a~KkdS~~ICFi  197 (356)
T COG0482         155 SQEQL----ERLLFPLGDLEKLEVRPIAAEKGLPTAKKKDSQGICFI  197 (356)
T ss_pred             CHHHH----HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEC
T ss_conf             88777----53225677777789999999759976676667762213