HHsearch alignment for GI: 254780546 and conserved domain: COG0482
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=99.39 E-value=2.6e-12 Score=106.09 Aligned_cols=172 Identities=16% Similarity=0.188 Sum_probs=121.7
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-----CCCHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 998399996694248999999999998648997299999966779-----878468999999999871898899997504
Q gi|254780546|r 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 (423)
Q Consensus 18 ~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl-----r~~s~~e~~~v~~~~~~lgi~~~~~~~~~~ 92 (423)
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~Q-------GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~ 74 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKEQ-------GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKE 74 (356)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-------CCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_conf 8767999905777899999999976-------974999999964147888677256789999999980995599846899
Q ss_pred ---------------CCCCCCHHHH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHH---HHHHHHHHCCCCCCCCCCCCC
Q ss_conf ---------------7877803788-854555543200123442012345666566---899998623654443322357
Q gi|254780546|r 93 ---------------KPQTGLMAAA-REARYALISEHAKTINATLIMTAHTFDDQL---ETVYMRSQRDYAEKGMGLSGM 153 (423)
Q Consensus 93 ---------------~~~~~~~~~a-r~~r~~~~~~~~~~~~~~~l~~ah~~dD~~---Et~l~rl~r~sg~~g~~l~~~ 153 (423)
T Consensus 75 y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~ 154 (356)
T COG0482 75 FWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYAL 154 (356)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHEECCC
T ss_conf 88888887789985799999651048788999999999975998578744676543776000146787420300020126
Q ss_pred CCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 64100357968710121042899999899818932026678642210
Q gi|254780546|r 154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 (423)
Q Consensus 154 ~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~ 200 (423)
T Consensus 155 ~~~ql----~~~lFPlG~l~K~evR~iA~~~gL~~a~KkdS~~ICFi 197 (356)
T COG0482 155 SQEQL----ERLLFPLGDLEKLEVRPIAAEKGLPTAKKKDSQGICFI 197 (356)
T ss_pred CHHHH----HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEC
T ss_conf 88777----53225677777789999999759976676667762213