HHsearch alignment for GI: 254780546 and conserved domain: PRK00143
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed.
Probab=99.54 E-value=2.4e-14 Score=120.54 Aligned_cols=172 Identities=16% Similarity=0.157 Sum_probs=119.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC-----CC-CCCHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 79983999966942489999999999986489972999999667-----79-8784689999999998718988999975
Q gi|254780546|r 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CL-RETAKDEVRYVSDVCSRLRIAHSVVSWK 90 (423)
Q Consensus 17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdH-----gl-r~~s~~e~~~v~~~~~~lgi~~~~~~~~ 90 (423)
T Consensus 2 ~sk~rV~VamSGGVDSsVaA~LL~~~-------Gy~V~Gv~m~~w~~~~~~~~C~~~~d~~dA~~va~~LgIp~~v~d~~ 74 (355)
T PRK00143 2 PSKKRVVVGMSGGVDSSVAAALLKEQ-------GYDVIGLFMKLWDDDDGSGGCCAEEDIADARAVADKLGIPLYVVDFA 74 (355)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHH
T ss_conf 98888999916789999999999977-------99589999988768877789985788999999999869857996869
Q ss_pred C-----------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CC-CCC
Q ss_conf 0-----------------478778037888545555432001234420123456665668999986236544--43-322
Q gi|254780546|r 91 N-----------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE--KG-MGL 150 (423)
Q Consensus 91 ~-----------------~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~--~g-~~l 150 (423)
T Consensus 75 ~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN-~~IKFg~l~~~A~~lgad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYfL 153 (355)
T PRK00143 75 KEFWDNVFDYFLDEYKAGRTPNPCVLCN-KEIKFKAFLDYALELGADYIATGHYARIRDEDGRYELLRAVDPNKDQSYFL 153 (355)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHCC-CCCCHHHHHHHHHHCCCCEECCCCEEEEEECCCEEEEEECCCCCCCCEEEE
T ss_conf 9876788999999997699999733408-723399999999873998423352599991598189986788988720576
Q ss_pred CCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 35764100357968710121042899999899818932026678642210
Q gi|254780546|r 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 (423)
Q Consensus 151 ~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~ 200 (423)
T Consensus 154 ~~l~~~~L----~~~~FPLG~~~K~eVR~iA~~~gL~~a~K~dSq~ICFi 199 (355)
T PRK00143 154 YQLTQEQL----AKLLFPLGELTKPEVREIAAEIGLPTAKKKDSTGICFI 199 (355)
T ss_pred ECCCHHHH----HHEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf 10579887----42075876773589999999758988997777860440