HHsearch alignment for GI: 254780546 and conserved domain: PRK00143

>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed.
Probab=99.54  E-value=2.4e-14  Score=120.54  Aligned_cols=172  Identities=16%  Similarity=0.157  Sum_probs=119.7

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC-----CC-CCCHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             79983999966942489999999999986489972999999667-----79-8784689999999998718988999975
Q gi|254780546|r   17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CL-RETAKDEVRYVSDVCSRLRIAHSVVSWK   90 (423)
Q Consensus        17 ~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdH-----gl-r~~s~~e~~~v~~~~~~lgi~~~~~~~~   90 (423)
T Consensus         2 ~sk~rV~VamSGGVDSsVaA~LL~~~-------Gy~V~Gv~m~~w~~~~~~~~C~~~~d~~dA~~va~~LgIp~~v~d~~   74 (355)
T PRK00143          2 PSKKRVVVGMSGGVDSSVAAALLKEQ-------GYDVIGLFMKLWDDDDGSGGCCAEEDIADARAVADKLGIPLYVVDFA   74 (355)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHH
T ss_conf             98888999916789999999999977-------99589999988768877789985788999999999869857996869


Q ss_pred             C-----------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CC-CCC
Q ss_conf             0-----------------478778037888545555432001234420123456665668999986236544--43-322
Q gi|254780546|r   91 N-----------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE--KG-MGL  150 (423)
Q Consensus        91 ~-----------------~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~--~g-~~l  150 (423)
T Consensus        75 ~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN-~~IKFg~l~~~A~~lgad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYfL  153 (355)
T PRK00143         75 KEFWDNVFDYFLDEYKAGRTPNPCVLCN-KEIKFKAFLDYALELGADYIATGHYARIRDEDGRYELLRAVDPNKDQSYFL  153 (355)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHCC-CCCCHHHHHHHHHHCCCCEECCCCEEEEEECCCEEEEEECCCCCCCCEEEE
T ss_conf             9876788999999997699999733408-723399999999873998423352599991598189986788988720576


Q ss_pred             CCCCCCCCCCCCCEEECCHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             35764100357968710121042899999899818932026678642210
Q gi|254780546|r  151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE  200 (423)
Q Consensus       151 ~~~~~~~~~~~~~~i~RPLL~~~r~~l~~~~~~~~i~wveDpSN~d~~f~  200 (423)
T Consensus       154 ~~l~~~~L----~~~~FPLG~~~K~eVR~iA~~~gL~~a~K~dSq~ICFi  199 (355)
T PRK00143        154 YQLTQEQL----AKLLFPLGELTKPEVREIAAEIGLPTAKKKDSTGICFI  199 (355)
T ss_pred             ECCCHHHH----HHEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf             10579887----42075876773589999999758988997777860440