HHsearch alignment for GI: 254780546 and conserved domain: PRK10660
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional.
Probab=100.00 E-value=0 Score=466.02 Aligned_cols=391 Identities=21% Similarity=0.256 Sum_probs=272.5
Q ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 85279983999966942489999999999986489972999999667798784689999999998718988999975047
Q gi|254780546|r 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK 93 (423)
Q Consensus 14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~ 93 (423)
T Consensus 8 ~~~~~~~~ilvavSGG~DS~~LL~~L~~l~~~~--~~~~l~~~HvnHgl~~~ad~~~~fv~~~c~~~~ip~~~~~~~v~~ 85 (433)
T PRK10660 8 RQLLESRQILVAFSGGLDSTVLLHQLVQWRTQN--PGVTLRAIHIHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQLAQ 85 (433)
T ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 646999989999728099999999999999866--898289999718979266999999999999759978999987279
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCC
Q ss_conf 87780378885455554320012344201234566656689999862365444332235764100357968710121042
Q gi|254780546|r 94 PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 (423)
Q Consensus 94 ~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~ 173 (423)
T Consensus 86 ~~~~~E~aAR~~RY~~f~~~~~~~--~~l~tAHh~dDQaETvLlrL~RGsG~~GL--~gm~~~r-~~~~~~liRPLL~~~ 160 (433)
T PRK10660 86 EGLGIEAAARQARYQAFARTLLPG--EVLVTAQHLDDQCETFLLALKRGSGPAGL--SAMAEVS-PFAGTQLLRPLLART 160 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHC--CEEEECCCCCHHHHHHHHHHHCCCCCCCC--CCCCCCC-CCCCCEEECCCHHHH
T ss_conf 997699999999999999987438--87996245651999999998658996445--6775224-478970773744665
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCC
Q ss_conf 899999899818932026678642210189997643453100---6677999999999979999999998840--04499
Q gi|254780546|r 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLT--VHMRS 248 (423)
Q Consensus 174 r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l~~~~---l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~ 248 (423)
T Consensus 161 r~eI~~Y~~~~~l~~~eD~SN~d~~y~RN~iR~~vlP~L~~~~P~~~~~l~r~a~l~~e~~~~l~~~~~~~~~~~~~~~~ 240 (433)
T PRK10660 161 RGELEQWAQAHGLRWIEDESNQDDRYDRNFLRLRVLPLLQQRWPHFAEATARSAALCAEQEQLLDELLAEDLAHCQTPDG 240 (433)
T ss_pred HHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999984998038999997611259999997899998780699999999999999999999999999998646267
Q ss_pred EEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH---HCCCCCEEECCCEEEEEECCEEEEEECCCCC
Q ss_conf 7998477833755789899999999983589999889999999998---6699845610757999889989998453437
Q gi|254780546|r 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325 (423)
Q Consensus 249 ~~~~~~~~~~~~~~~~~r~l~~~l~~~~g~~~~p~~~~l~~ll~~l---~~~~~~~~tl~g~~i~~~~~~l~i~RE~~~~ 325 (423)
T Consensus 241 ~l-~~~~l~~l~~~~~~~llr~wl~~~~--~~~p~~~~l~~i~~~~~~~~~d~~~~l~~~~~~vr~y~~~l~~~~~~~~~ 317 (433)
T PRK10660 241 TL-QIDPLLAMSDARRAAILRRWLAGQN--APMPSRDALQRIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVAGQ 317 (433)
T ss_pred CC-CHHHHHHCCHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCEEEEECCCCCC
T ss_conf 23-3376775799999999999999647--99985999999999998516688827998898999987889995256665
Q ss_pred CCCCC----CCCCCEEECCCEEEECCCCCEEE-ECCCCCCCCCCCCCCC-CCCCHHHHHHCCHHHCCCEEECCCCCCCCH
Q ss_conf 75523----68982320784175127775035-2167544254201231-135546776271242797661230068881
Q gi|254780546|r 326 PTLIL----YPEETTVWDGRYQFQNLSDSLIQ-IGPQSYRKADVPSGIP-PIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399 (423)
Q Consensus 326 ~~~~~----~~~~~~~wDgR~~i~~~~~~~~~-l~~~g~~~~~~~~~~~-~~~~~~~l~~lP~~~~g~~liaP~~r~~~~ 399 (423)
T Consensus 318 ~~~~~~~~~~~~~l~lp~~~g~~~~~~~~~~~~~~~~~~l~iR~r~~Gd~~~~g~~gsKkLKk~f~d~k-IP~~~R~~iP 396 (433)
T PRK10660 318 SETIVPWPTWLQPLELPAGLGSVQLVAGGDIRPPRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELG-IPPWLRDTTP 396 (433)
T ss_pred CCCCCCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCHHHHHHHHHCC-CCHHHHCCCC
T ss_conf 555434567786266369971799766754256678995799817997578789999805999999849-8989967868
Q ss_pred H---HHHHHHHHHHHHCCC
Q ss_conf 1---214888888874557
Q gi|254780546|r 400 F---DLPVAYAFSISFGKV 415 (423)
Q Consensus 400 ~---d~~~~~~~~~~~~~~ 415 (423)
T Consensus 397 Ll~~~~~ivwv~Gv~vs~~ 415 (433)
T PRK10660 397 LLFYGETLIAAAGVFVTQE 415 (433)
T ss_pred EEEECCEEEEEECEEECCC
T ss_conf 8999999999916568434