HHsearch alignment for GI: 254780546 and conserved domain: TIGR00032

>TIGR00032 argG argininosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate , . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process.
Probab=98.27  E-value=4.3e-05  Score=55.06  Aligned_cols=160  Identities=16%  Similarity=0.192  Sum_probs=97.7

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCE-EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC------
Q ss_conf             3999966942489999999999986489972-999999667798784689999999998718988999975047------
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------   93 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~-~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~------   93 (423)
T Consensus         1 KVvLAySGGLDTSv~l~wL~~----k--yG~~~Via~~~dvG-QPD-E~d~~~~~~kA~~~GA~~~-~~iDak~eFv~dy   71 (420)
T TIGR00032         1 KVVLAYSGGLDTSVCLKWLEE----K--YGYEEVIAVTADVG-QPD-EEDIDAIEEKALKYGAEKH-YTIDAKEEFVKDY   71 (420)
T ss_pred             CEEEEEECCHHHHHHHHHHHH----H--HCCCCEEEEEEECC-CCC-HHHHHHHHHHHHHHCCCEE-EEEECHHHHHHHH
T ss_conf             968886070259999999886----5--28986079997567-999-8888889999887367102-5772368899999


Q ss_pred             ------------CC-----CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             ------------87-----7803788854555543200123442012345666566899998623654443322357641
Q gi|254780546|r   94 ------------PQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT  156 (423)
Q Consensus        94 ------------~~-----~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~  156 (423)
T Consensus        72 ~f~aiqanA~Ye~~GG~~Y~L~TaLaRPlIA~~lVe~Ak~~Ga~Ava--HGC------------TGKGNDQ~RFe~--~~  135 (420)
T TIGR00032        72 LFAAIQANAVYEGTGGLVYPLSTALARPLIAKKLVEVAKKEGAEAVA--HGC------------TGKGNDQVRFER--SI  135 (420)
T ss_pred             HHHHHHCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE--CCC------------CCCCCCHHHHHH--HH
T ss_conf             88876506603178741034766114579999999998466954987--076------------877741357658--88


Q ss_pred             CCCCCCCEEECCH--HCCC-----HHHHHHHHHHHCCCCCCCCCCCCCCC--CHHHHHHHH
Q ss_conf             0035796871012--1042-----89999989981893202667864221--018999764
Q gi|254780546|r  157 ILYDLNLWISRPF--LRCR-----REDIRSFLLQRNISWCEDPSNTDDRF--ERVRVRRFV  208 (423)
Q Consensus       157 ~~~~~~~~i~RPL--L~~~-----r~~l~~~~~~~~i~wveDpSN~d~~f--~R~rlR~~l  208 (423)
T Consensus       136 ~~~~p~LkviaP~R~~~~~e~lgGR~e~~eYa~~~Gip~---p~~~~K~YSiD~Nl~grs~  193 (420)
T TIGR00032       136 RALNPDLKVIAPWRDLNLTEELGGREEEIEYAAQKGIPV---PMTKEKPYSIDENLWGRSI  193 (420)
T ss_pred             HHHCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHHHH
T ss_conf             752689858747346467764059488999999668887---6546777762366775555