HHsearch alignment for GI: 254780546 and conserved domain: cd00293
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=94.98 E-value=0.31 Score=27.79 Aligned_cols=95 Identities=18% Similarity=0.136 Sum_probs=62.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-----------CHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 39999669424899999999999864899729999996677987-----------8468999999999871898899997
Q gi|254780546|r 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-----------TAKDEVRYVSDVCSRLRIAHSVVSW 89 (423)
Q Consensus 21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~-----------~s~~e~~~v~~~~~~lgi~~~~~~~ 89 (423)
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~---~~~l~~v~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 77 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL---GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVL 77 (130)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999898989999999999999872---997999999728865530144678999999999999985427983899999
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 504787780378885455554320012344201234566656
Q gi|254780546|r 90 KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 (423)
Q Consensus 90 ~~~~~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~ 131 (423)
T Consensus 78 ~~~~-------------~~~i~~~a~~~~~dliV~G~~~~~~ 106 (130)
T cd00293 78 EGDP-------------AEAILEAAEELGADLIVMGSRGRSG 106 (130)
T ss_pred ECCH-------------HHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 4661-------------8999887776118899994799975