HHsearch alignment for GI: 254780546 and conserved domain: cd01987
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=96.93 E-value=0.0038 Score=41.24 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=75.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC----CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 399996694248999999999998648997299999966779----8784689999999998718988999975047877
Q gi|254780546|r 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL----RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT 96 (423)
Q Consensus 21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl----r~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~~~ 96 (423)
T Consensus 1 rILV~vd~s~~s~~lir~a~rlA~~~---~a~l~vl~V~~~~~~~~~~~~~~~l~~~~~la~~lga~~~~~~~--~---- 71 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL---KAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPG--D---- 71 (124)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHC---CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--C----
T ss_conf 99999589850799999999999964---99899999955975658979999999999999985998999947--9----
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 80378885455554320012344201234566656689999862365444
Q gi|254780546|r 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146 (423)
Q Consensus 97 ~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~ 146 (423)
T Consensus 72 d~--------~~~I~~~A~~~~~t~IVlG~~~~~~----~~~~~~gSv~~ 109 (124)
T cd01987 72 DV--------AEAIVEFAREHNVTQIVVGKSRRSR----WRELFRGSLVD 109 (124)
T ss_pred CH--------HHHHHHHHHHCCCCEEEECCCCCCH----HHHHHCCCHHH
T ss_conf 98--------9999999998499899976898854----68872388999