HHsearch alignment for GI: 254780546 and conserved domain: cd01997
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.03 E-value=2.4e-09 Score=85.06 Aligned_cols=152 Identities=22% Similarity=0.284 Sum_probs=99.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC-CCCHHHHHHHHHHHHHH-CCCCEEEEEEECC-----C
Q ss_conf 399996694248999999999998648997299999966779-87846899999999987-1898899997504-----7
Q gi|254780546|r 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSR-LRIAHSVVSWKNS-----K 93 (423)
Q Consensus 21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHgl-r~~s~~e~~~v~~~~~~-lgi~~~~~~~~~~-----~ 93 (423)
T Consensus 1 kVi~~lSGGVDStV~A~Ll~kAig------~~l~~vfVDnGlmRk~---E~e~V~~~~~~~~~~~~~~vdas~~Fl~~L~ 71 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIG------DRLTCVFVDNGLLRKN---EAERVEELFSKLLGINLIVVDASERFLSALK 71 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHH------CCEEEEEECCCCCCCC---CHHHHHHHHHHHCCCCEEEECHHHHHHHHHC
T ss_conf 989990578289999999998865------0569999858978888---2999999998706997799566999999865
Q ss_pred CCCCCHH---HHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 8778037---888545555432001234-4201234566656689999862365--444332235764100357968710
Q gi|254780546|r 94 PQTGLMA---AAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDY--AEKGMGLSGMCDTILYDLNLWISR 167 (423)
Q Consensus 94 ~~~~~~~---~ar~~r~~~~~~~~~~~~-~~~l~~ah~~dD~~Et~l~rl~r~s--g~~g~~l~~~~~~~~~~~~~~i~R 167 (423)
T Consensus 72 gv~DPE~KRKiIG~~Fi~vf~~~~~~~~~~~~L~QGTlyPDvIES~~~---~~~a~~IKsHHNvggLp---~~~~~kliE 145 (295)
T cd01997 72 GVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSG---KGSADTIKSHHNVGGLP---EDMKLKLIE 145 (295)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCC---CCCCCEEEEECCCCCCC---HHCCCCCCH
T ss_conf 877925636565389999999999755886189724302625750788---88875145224567772---322654001
Q ss_pred CHHCCCHHHHHHHHHHHCCC
Q ss_conf 12104289999989981893
Q gi|254780546|r 168 PFLRCRREDIRSFLLQRNIS 187 (423)
Q Consensus 168 PLL~~~r~~l~~~~~~~~i~ 187 (423)
T Consensus 146 PLr~LfKDEVR~lG~~LGlp 165 (295)
T cd01997 146 PLRDLFKDEVRELGRELGLP 165 (295)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 67887459999999986897