HHSEARCH alignment of GI: 254780546 and SCOP domain: d1j20a1

Alignment
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.61  E-value=2.2e-18  Score=145.79  Aligned_cols=154  Identities=13%  Similarity=0.059  Sum_probs=84.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC-----C
Q ss_conf             39999669424899999999999864899729999996677987846899999999987189889999750478-----7
Q gi|254780546|r   21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-----Q   95 (423)
Q Consensus        21 ~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~~-----~   95 (423)
                      ||+||+|||+|||+||+++++..      +.++.++|++|+.+.+++++...    |..++....+........     .
T Consensus         2 KvlvA~SGG~DS~vll~lL~e~~------~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   71 (165)
T d1j20a1           2 KIVLAYSGGLDTSIILKWLKETY------RAEVIAFTADIGQGEEVEEAREK----ALRTGASKAIALDLKEEFVRDFVF   71 (165)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHH------TCEEEEEEEESSCSSCHHHHHHH----HHHHTCSEEEEEECHHHHHHHTHH
T ss_pred             EEEEEEECHHHHHHHHHHHHHCC------CCEEEEEEECCCCHHHHHHHHHH----HHHCCCCCEEEEEHHHHHHHHCCC
T ss_conf             89999728899999999999728------99799998035874777888889----986066522553000233552247


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---EEECCHHCC
Q ss_conf             78037888545555432001234420123456665668999986236544433223576410035796---871012104
Q gi|254780546|r   96 TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL---WISRPFLRC  172 (423)
Q Consensus        96 ~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~---~i~RPLL~~  172 (423)
                      ......++..++......+...........|+.+++.++..+....+.+..+..  . ........+.   +.+|||+.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~i~p~rpl~~~  148 (165)
T d1j20a1          72 PMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRF--E-LTAYALKPDIKVIAPWREWSFQ  148 (165)
T ss_dssp             HHHHTTCCBTTTBCCTTTTTHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHH--H-HHHHHHSTTCEEECHHHHCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC--C-CCHHHHCCCCEEEEEEEECCCC
T ss_conf             077899998743135677887766655442100023444444540467875444--4-2024326897289986106799


Q ss_pred             CHHHHHHHHHHHCCC
Q ss_conf             289999989981893
Q gi|254780546|r  173 RREDIRSFLLQRNIS  187 (423)
Q Consensus       173 ~r~~l~~~~~~~~i~  187 (423)
                      +|+||++||+++|||
T Consensus       149 ~k~ei~~ya~~~~iP  163 (165)
T d1j20a1         149 GRKEMIAYAEAHGIP  163 (165)
T ss_dssp             SHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHCCC
T ss_conf             899999999992889


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Thermus thermophilus [TaxId: 274]