HHSEARCH alignment of GI: 254780546 and SCOP domain: d1ni5a1

Alignment
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=1.7e-44  Score=330.45  Aligned_cols=206  Identities=28%  Similarity=0.357  Sum_probs=177.7

Q ss_pred             HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             85279983999966942489999999999986489972999999667798784689999999998718988999975047
Q gi|254780546|r   14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK   93 (423)
Q Consensus        14 ~~l~~~~~i~vAvSGG~DS~aLl~ll~~~~~~~~~~~~~l~a~~vdHglr~~s~~e~~~v~~~~~~lgi~~~~~~~~~~~   93 (423)
                      +++.+..||+||||||+|||+|||+++++....  .++++.++|||||+|++|+.|+.+|+++|.++||++++.+++...
T Consensus         8 ~~l~~~kkvlva~SGG~DS~~Ll~ll~~~~~~~--~~~~l~~~~vdh~~r~~s~~~~~~~~~~~~~~~i~~~i~~~~~~~   85 (227)
T d1ni5a1           8 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQ   85 (227)
T ss_dssp             HHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS--TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCCCC
T ss_pred             HHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             542889968999638499999999999998758--895699998678987521445899999975415763266313333


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCC
Q ss_conf             87780378885455554320012344201234566656689999862365444332235764100357968710121042
Q gi|254780546|r   94 PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR  173 (423)
Q Consensus        94 ~~~~~~~~ar~~r~~~~~~~~~~~~~~~l~~ah~~dD~~Et~l~rl~r~sg~~g~~l~~~~~~~~~~~~~~i~RPLL~~~  173 (423)
                      ...++++.+|+.+|..+...  ..++..++||||+||++||++|++.+|+|..|+  .+|++. ....++.++|||+.++
T Consensus        86 ~~~~~e~~~~~~~~~~~~~~--~~~~~~i~~gH~~dD~~Et~l~~l~~g~~~~~l--~~~~~~-~~~~~~~iiRPLl~~~  160 (227)
T d1ni5a1          86 EGLGIEAQARQARYQAFART--LLPGEVLVTAQHLDDQCETFLLALKRGSGPAGL--SAMAEV-SEFAGTRLIRPLLART  160 (227)
T ss_dssp             SSSTTTTHHHHHHHHHHHHT--CCTTEEEECCCCHHHHHHHHHHHHTTTCCTTGG--GCCCSE-EEETTEEEECGGGSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCC-CCCCCCCCHHHHHCCC
T ss_conf             44303668999999988877--520389999988886540566766326421111--110010-1235443126664277


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999989981893202667864221018999764345310066779999999
Q gi|254780546|r  174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL  226 (423)
Q Consensus       174 r~~l~~~~~~~~i~wveDpSN~d~~f~R~rlR~~l~~l~~~~l~~~~~~~~~~  226 (423)
                      |+||++||+.+|++|++||||.|+.|+||++|+.+.|.+....+.....+.+.
T Consensus       161 k~eI~~~~~~~~l~~~~d~sn~~~~~~Rn~iR~~l~p~l~~~~p~~~~~l~~~  213 (227)
T d1ni5a1         161 RGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARS  213 (227)
T ss_dssp             HHHHHHHHHHTTCCCBCCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99999875043666434899885131799999999999998793599999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain
species: Escherichia coli [TaxId: 562]