RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780546|ref|YP_003064959.1| hypothetical protein
CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62]
(423 letters)
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase,
PP-type, PSI, protein structure initiative; 2.65A
{Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Length = 433
Score = 133 bits (334), Expect = 1e-31
Identities = 72/341 (21%), Positives = 124/341 (36%), Gaps = 16/341 (4%)
Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
R L+ ILVA SGG DS LL L ++ + AI V H L A V +
Sbjct: 8 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENP--GVALRAIHVHHGLSANADAWVTHC 65
Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
+VC + ++ V + ++ G+ A AR+ARY + +++TA DDQ E
Sbjct: 66 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQCE 123
Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
T + +R G + + RP L R ++ + Q ++ W ED S
Sbjct: 124 TFLLALKRGS---GPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDES 180
Query: 194 NTDDRFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
N DD ++R +R V + + L + + + L+ L
Sbjct: 181 NQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQSPQG 240
Query: 251 AISQDILNIDSTLL--FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
+ + S + R A S + + + + C+ +G
Sbjct: 241 TLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRLGAFE 300
Query: 309 IDRRANFLWITRAVRNLPTLIL----YPEETTVWDGRYQFQ 345
I R + LW ++V I+ + + + G Q
Sbjct: 301 IRRYQSQLWWIKSVTGQSENIVPWQTWLQPLELPAGLGSVQ 341
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A {Aquifex
aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Length = 317
Score = 95.8 bits (237), Expect = 2e-20
Identities = 62/309 (20%), Positives = 106/309 (34%), Gaps = 24/309 (7%)
Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
+L+A SGG DS+ L L + F + + +H LRE+A+ + + +
Sbjct: 26 RVLIAFSGGVDSVVLTDVLLKLK--NYFSLKEVALAHFNHMLRESAERDEEFCKEFAKER 83
Query: 81 RIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
+ V + + L A R RY + E ++ I TAH +D LET
Sbjct: 84 NMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSL 143
Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
+ R G+ G I RP +R +I + + + W ED +N +
Sbjct: 144 LFFTRGTGLDGL--IGFLPK-----EEVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYE 196
Query: 197 DRFERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
R R+R V L K + + K +
Sbjct: 197 VSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLYKEVKKGNCLDV 256
Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
+ + L ++R I Y +E V L+ G + G+V+ R+
Sbjct: 257 KKLKEKPLALQRRVIR-------KFIGEKDYEKVELVRSLLEKGGEVNLGKGKVLK-RKE 308
Query: 314 NFLWITRAV 322
+L + V
Sbjct: 309 RWLCFSPEV 317
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 88.2 bits (217), Expect = 3e-18
Identities = 83/371 (22%), Positives = 127/371 (34%), Gaps = 28/371 (7%)
Query: 6 IESVRFFVR--SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
I+ VR F+ L+ A ++V VSGG DS+ LL S+ R K++ A VDH
Sbjct: 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSL---RDEWKLQVIAAHVDHMF 58
Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
R +++E+ +V C RI G AAR RY +E +
Sbjct: 59 RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118
Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
A + H DDQ+ET+ MR R KG ++ RPFL R +I
Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSKGY---AGIPVKRPFHGGYLIRPFLAVSRAEI 175
Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKV 230
++ Q +S DPSN D + R R R + + ++FQ +
Sbjct: 176 EAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFL 235
Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
A + K + R L + L +L++ G +
Sbjct: 236 EELAADALNKVMEKQHRDAALSIGPFLELPRPLQRRVLQLLLLRLYGGVPPTLTSVHIGH 295
Query: 291 MLFLKSGKRGCVSI----GRVVIDRRANFLWITRAVRNLPTLIL---YPEETTVWDGRYQ 343
+L L R I G VI L+ A P + +G
Sbjct: 296 ILMLCERGRPSGMIDLPKGLKVIRSYDRCLFTFDAESGEKGYWFELPVPALLPLPNGYAI 355
Query: 344 FQNLSDSLIQI 354
+ +
Sbjct: 356 ISEFGEHYPRK 366
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 66.1 bits (161), Expect = 1e-11
Identities = 90/499 (18%), Positives = 141/499 (28%), Gaps = 221/499 (44%)
Query: 4 SPIESV-RF--FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
+P E V +F +V SLV P+ + G L + L + +
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKV------GQFDQVLNLCLTEF--ENCY------------ 95
Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR------EARYALISEHA 114
L +D+ H++ + + T L+ AR
Sbjct: 96 -LEG---------NDI-------HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 115 KTINATLIMTAHTFDDQLETVYMRSQ---RDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
K N+ L + QL ++ Q DY E+ L + T Y +
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIF-GGQGNTDDYFEE---LRDLYQT--Y-------HVLVG 185
Query: 172 -------------CRREDIRSFLLQR--NI-SWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
R + + NI W E+PSNT D +D
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD-----------KD----- 229
Query: 216 LYLKMKKFQDLRVKVNNAVAM-LIP-----------KYLTVH---MRSIIAI----SQDI 256
YL ++ ++ LI K L +RS + SQ +
Sbjct: 230 -YL-----------LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 257 LN---I---DS------------TLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLK 295
+ I DS T+LF++ G R E L
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFI---------------GVRCYEAYPNTSLPPS 322
Query: 296 SGKRGCVSIGRVVIDRRAN-------FLWITRAVRNLP-----TLI------LYPEETTV 337
++ D N L ++ NL + L P
Sbjct: 323 -----------ILEDSLENNEGVPSPML----SISNLTQEQVQDYVNKTNSHL-PAG--- 363
Query: 338 WDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL----APF 393
+ + SL+ G ++ V SG PP + L+ K L PF
Sbjct: 364 -------KQVEISLVN-GAKNL----VVSG-PP-QSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 394 S----RFMTKFDLPVAYAF 408
S +F +F LPVA F
Sbjct: 410 SERKLKFSNRF-LPVASPF 427
Score = 46.9 bits (111), Expect = 8e-06
Identities = 37/199 (18%), Positives = 59/199 (29%), Gaps = 55/199 (27%)
Query: 99 MAAA--REARYALISEHAKTINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCD 155
M A R L H + L+ TA F QL+ + + + E G + D
Sbjct: 1 MDAYSTR----PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTE---GFAAD-D 52
Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR--------FERVRVRRF 207
L FL ++ D+ FE +
Sbjct: 53 EPTTPAELVGK--FL--------GYVSSLV---EPSKVGQFDQVLNLCLTEFEN----CY 95
Query: 208 VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
+ D+HAL K+ + D + LI Y+ + I + ++ LF
Sbjct: 96 LEGNDIHALAAKLLQENDTTLV---KTKELIKNYI----TARIMAKRPFDKKSNSALF-- 146
Query: 268 LRVSA--------AICGGQ 278
+ AI GGQ
Sbjct: 147 --RAVGEGNAQLVAIFGGQ 163
Score = 42.6 bits (100), Expect = 2e-04
Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 77/268 (28%)
Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLL--IALHSVLSDRSFGKIKFSAISVDH 60
+P E +RS L +G S GL+ +A+ S SF AI+V
Sbjct: 258 FTPGE-----LRSY------LKGATG--HSQGLVTAVAIAETDSWESFFVSVRKAITV-- 302
Query: 61 CLRETAKDEVRYVSDVC----SRLRIAHSVV--SWKNSKPQTGLMAAAREARYALISEHA 114
L VR C + S++ S +N++ M + + ++
Sbjct: 303 -LFFIG---VR-----CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 115 KTINATLIMTAHTFDDQLETVYM---RSQRDYAEKGMGLSGMCDTILYDLNLWI------ 165
N+ L V + ++ G S LY LNL +
Sbjct: 354 NKTNSHLPAGKQ--------VEISLVNGAKNLVVSGPPQS------LYGLNLTLRKAKAP 399
Query: 166 -----SR-PFLRCRREDIR-SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHA 215
SR PF R+ FL ++ P ++ + + ++ +A
Sbjct: 400 SGLDQSRIPF-SERKLKFSNRFL---PVA---SPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 216 LYLKMKKF-----QDLRVKVNNAVAMLI 238
+++ + DLRV + ++
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIV 480
Score = 29.9 bits (67), Expect = 1.1
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIA 38
+ + A HIL GG+ +G+L
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTH 517
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA
methyltransferase, methanocaldococcus jannaschii DSM ,
PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Length = 203
Score = 65.1 bits (158), Expect = 3e-11
Identities = 24/215 (11%), Positives = 54/215 (25%), Gaps = 38/215 (17%)
Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
+ V SGG DS + L + I+++ + + K L
Sbjct: 9 VHVLFSGGKDSSLSAVILKKL-------GYNPHLITINFGVIPSYKLAEE----TAKILG 57
Query: 82 IAHSVVSWKNSKPQTGL---------MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
H V++ + A + ++ A + + DD++
Sbjct: 58 FKHKVITLDRKIVEKAADMIIEHKYPGPAIQYVHKTVLEILADEYSI--LADGTRRDDRV 115
Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
+ + + P + + +R L E
Sbjct: 116 PKLSYSEIQSLEMRKNI--------------QYITPLMGFGYKTLR-HLASEFFILEEIK 160
Query: 193 SNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDL 226
S T + +R +++ + Q
Sbjct: 161 SGTKLSSDYEAEIRHILKERGESPEKYFPEHKQTR 195
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex,
transferase/RNA complex; 3.10A {Escherichia coli} PDB:
2det_A 2deu_A*
Length = 380
Score = 34.7 bits (79), Expect = 0.044
Identities = 35/216 (16%), Positives = 64/216 (29%), Gaps = 40/216 (18%)
Query: 22 ILVAVSGGSDSM---GLL-------IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
++V +SGG DS LL L + G+ ++C TA ++
Sbjct: 20 VIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGE--------EYC---TAAADLA 68
Query: 72 YVSDVCSRLRIAHSVV----------------SWKNSKPQTGLMAAAREARYALISEHA- 114
VC +L I V +K + + +E ++ E A
Sbjct: 69 DAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAA 128
Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
+ + A I T H R R + S T+ ++ P +
Sbjct: 129 EDLGADYIATGHYVRRADVDGKSRLLRG-LDSNKDQSYFLYTLSHEQIAQSLFPVGELEK 187
Query: 175 EDIRSFLLQRNISWCEDPSNTD-DRFERVRVRRFVR 209
+R + + +T + R F+
Sbjct: 188 PQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLG 223
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA
modification, tRNA, hydrolase; 2.95A {Bacillus
subtilis}
Length = 219
Score = 33.1 bits (75), Expect = 0.11
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
+V SGG DS L+ + F +++ ++ + R EV + +L
Sbjct: 6 AIVVFSGGQDSTTCLLWAL-----KEFEEVE--TVTFHYNQRH--SQEVEVAKSIAEKLG 56
Query: 82 IAHSVVSWKN 91
+ + ++
Sbjct: 57 VKNHLLDMSL 66
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B;
structural genomics, NPPSFA; 1.43A {Pyrococcus
horikoshii OT3} PDB: 2z0c_A 3a4i_A
Length = 308
Score = 32.8 bits (74), Expect = 0.17
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 15/135 (11%)
Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
+R V + ++A+SGG DS + H + DR A+ V+ R+ + V
Sbjct: 13 EIRETVGDSKAIIALSGGVDSSTAAVLAHKAIGDRLH------AVFVNTGFLRKGEPEFV 66
Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-------LISEHAKTINATLIM 123
+ + H V + + E R + E AK I A ++
Sbjct: 67 VKTFRDEFGMNL-HYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLI 125
Query: 124 TAHTFDDQLETVYMR 138
D +E+
Sbjct: 126 QGTIAPDWIESQGKI 140
>2hma_A Probable tRNA (5-methylaminomethyl-2-
thiouridylate)-methyltransferase; alpha-beta, beta
barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A
{Streptococcus pneumoniae}
Length = 376
Score = 32.4 bits (73), Expect = 0.19
Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 26/126 (20%)
Query: 22 ILVAVSGGSDSM---GLL-------IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
++V +SGG DS LL I + D + C TA ++ +
Sbjct: 12 VVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEN--------GVC---TATEDYK 60
Query: 72 YVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
V V ++ I + V W A + + + + A
Sbjct: 61 DVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAI 120
Query: 127 TFDDQL 132
T
Sbjct: 121 TLGADY 126
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding
protein, RNA binding protein, tRNA modification,
4-thiouridine synthase; HET: AMP; 2.5A {Bacillus
anthracis} SCOP: c.26.2.6 d.308.1.1
Length = 413
Score = 30.8 bits (69), Expect = 0.65
Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 20/128 (15%)
Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
++V +SGG DS + A+ T++ + V D+ L
Sbjct: 190 VMVLLSGGIDSPVAAYLTMKR-------GVSVEAVHFHSPPF-TSERAKQKVIDLAQELT 241
Query: 82 IAHSVV------------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
V + P + M R + A+ NA I T +
Sbjct: 242 KYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLG 301
Query: 130 DQLETVYM 137
Sbjct: 302 QVASQTLD 309
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.6 bits (68), Expect = 0.72
Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 24/124 (19%)
Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
++E I+ +++ ++ E T ++F+ + +D+ ++ + + VK+
Sbjct: 919 KKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDK----VDI----FEIPETGEYSVKLLK 970
Query: 233 AVAMLIPKYLTVHMRSIIA-------------ISQDILN-IDSTLLFYLLRVSAAICGGQ 278
+ IPK L ++A IS DI++ +D LF L+ V A
Sbjct: 971 GATLYIPKAL--RFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASG 1028
Query: 279 ISLP 282
I+ P
Sbjct: 1029 ITDP 1032
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 27.2 bits (59), Expect = 7.0
Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 21/200 (10%)
Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
++ +SGG DS A+ VL + F + +A ++ + + ++C +
Sbjct: 28 VVYGLSGGLDS-----AVVGVLCQKVFKE---NAHALLMPSSVSMPENKTDALNLCEKFS 79
Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
I ++ S A A L M +
Sbjct: 80 IPYTEYSIAP------YDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTS 133
Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW--CEDPSNTDDRF 199
+ +E+ +G + + +N + NI P + D
Sbjct: 134 NKSERMLGYGTLFGDLACAINPIGELFKTEVYE-----LARRLNIPKKILNKPPSADLFV 188
Query: 200 ERVRVRRFVRDIDLHALYLK 219
+ + + LK
Sbjct: 189 GQSDEKDLGYPYSVIDPLLK 208
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase,
nucleotide-binding; HET: FAD; 1.90A {Saccharomyces
cerevisiae}
Length = 306
Score = 26.8 bits (58), Expect = 9.0
Identities = 33/174 (18%), Positives = 52/174 (29%), Gaps = 19/174 (10%)
Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
I + +GG D LL+ S L + F K + ++ + + S RL
Sbjct: 56 ISFSYNGGKDCQVLLLLYLSCLWEYFFIK------------AQNSQFDFEFQSFPMQRLP 103
Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS-- 139
P RY L ++ + + A F D ++
Sbjct: 104 TVFIDQEETF--PTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAI 161
Query: 140 ---QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
R G L + T + +P L +I SFLL N C
Sbjct: 162 VIGIRHTDPFGEALKPIQRTDSNWPDFMRLQPLLHWDLTNIWSFLLYSNEPICG 215
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
heterodimer, pyrophosphate, G protein; HET: GDP AGS;
2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 26.7 bits (58), Expect = 9.2
Identities = 26/201 (12%), Positives = 51/201 (25%), Gaps = 23/201 (11%)
Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRE 64
ES+ + ++ S G DS + LH GK+ F + VD +E
Sbjct: 34 ESIHIIREVAAEFDNPVMLYSIGKDSAVM---LHLARKAFFPGKLPFPVMHVDTRWKFQE 90
Query: 65 TAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINA 119
R+ + + + + P T A + + A +
Sbjct: 91 M----YRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHG 146
Query: 120 TLIMTAHTFDDQ---------LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
D+ + + D + L + + + P
Sbjct: 147 FDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLS 206
Query: 171 RCRREDIRSFLLQRNISWCED 191
DI ++ I
Sbjct: 207 NWTELDIWQYIYLEGIPIVPL 227
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.326 0.139 0.415
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,601,926
Number of extensions: 167674
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 21
Length of query: 423
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 328
Effective length of database: 3,390,050
Effective search space: 1111936400
Effective search space used: 1111936400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.6 bits)