HHsearch alignment for GI: 254780547 and conserved domain: COG1360

>COG1360 MotB Flagellar motor protein [Cell motility and secretion].
Probab=99.94  E-value=2e-26  Score=173.56  Aligned_cols=105  Identities=29%  Similarity=0.443  Sum_probs=96.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEE-EEEEEEECCCC---CCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf             10022047522432479999999843025605-89999722665---3333200111337999999998528-9860699
Q gi|254780547|r   50 DSVFFDTSSYSIRPADIQVLSNLGSWLEKHDC-DFLIEGHADEL---GSRNSSIALGLRRAYAVFNYFVARG-ISASRMK  124 (160)
Q Consensus        50 ~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~-~i~I~GhtD~~---Gs~~yN~~LS~~RA~aV~~~L~~~G-i~~~ri~  124 (160)
T Consensus       132 ~~~~F~~gsa~~~~~~~~~l~~ia~~l~~~~~~~I~I~GHTDn~p~~~~~~sNWeLS~aRA~~v~~~L~~~g~~~~~~~~  211 (244)
T COG1360         132 DSLMFASGSAVVQPEFRDLLLKIAKLLADIPNGNIRIEGHTDNVPIKGSFYSNWELSAARAQSVVRVLINGGLVEAKRLS  211 (244)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             44464677521276679999999999872679828998658997667788850888999999999999974899856689


Q ss_pred             EEEECCCCCCCCCCCHHHHHCCCEEEEEEE
Q ss_conf             997074489899878779842991899997
Q gi|254780547|r  125 VTSYGKEMPSVYGHDEDAYAKNRRAIVFLK  154 (160)
Q Consensus       125 ~~g~G~~~P~~~~~~~~~~~~NRRVei~i~  154 (160)
T Consensus       212 ~~G~gd~~Pva~n~t~~~ra~NRRVeI~i~  241 (244)
T COG1360         212 VVGYADTRPLADNDTAEGRAKNRRVEILIL  241 (244)
T ss_pred             EEECCCCCCCCCCCCHHHHHHCCEEEEEEE
T ss_conf             971254776788988134765783799983