HHsearch alignment for GI: 254780547 and conserved domain: COG1360
>COG1360 MotB Flagellar motor protein [Cell motility and secretion].
Probab=99.94 E-value=2e-26 Score=173.56 Aligned_cols=105 Identities=29% Similarity=0.443 Sum_probs=96.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEE-EEEEEEECCCC---CCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf 10022047522432479999999843025605-89999722665---3333200111337999999998528-9860699
Q gi|254780547|r 50 DSVFFDTSSYSIRPADIQVLSNLGSWLEKHDC-DFLIEGHADEL---GSRNSSIALGLRRAYAVFNYFVARG-ISASRMK 124 (160)
Q Consensus 50 ~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~-~i~I~GhtD~~---Gs~~yN~~LS~~RA~aV~~~L~~~G-i~~~ri~ 124 (160)
T Consensus 132 ~~~~F~~gsa~~~~~~~~~l~~ia~~l~~~~~~~I~I~GHTDn~p~~~~~~sNWeLS~aRA~~v~~~L~~~g~~~~~~~~ 211 (244)
T COG1360 132 DSLMFASGSAVVQPEFRDLLLKIAKLLADIPNGNIRIEGHTDNVPIKGSFYSNWELSAARAQSVVRVLINGGLVEAKRLS 211 (244)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 44464677521276679999999999872679828998658997667788850888999999999999974899856689
Q ss_pred EEEECCCCCCCCCCCHHHHHCCCEEEEEEE
Q ss_conf 997074489899878779842991899997
Q gi|254780547|r 125 VTSYGKEMPSVYGHDEDAYAKNRRAIVFLK 154 (160)
Q Consensus 125 ~~g~G~~~P~~~~~~~~~~~~NRRVei~i~ 154 (160)
T Consensus 212 ~~G~gd~~Pva~n~t~~~ra~NRRVeI~i~ 241 (244)
T COG1360 212 VVGYADTRPLADNDTAEGRAKNRRVEILIL 241 (244)
T ss_pred EEECCCCCCCCCCCCHHHHHHCCEEEEEEE
T ss_conf 971254776788988134765783799983