HHsearch alignment for GI: 254780547 and conserved domain: PRK07734
>PRK07734 motB flagellar motor protein MotB; Reviewed.
Probab=99.95 E-value=3.1e-28 Score=184.02 Aligned_cols=107 Identities=21% Similarity=0.402 Sum_probs=96.1
Q ss_pred HCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEEEECCCC--CCCCC--CCHHHHHHHHHHHHHHHH-CCCCCE
Q ss_conf 031002204752243247999999984302-560589999722665--33332--001113379999999985-289860
Q gi|254780547|r 48 VGDSVFFDTSSYSIRPADIQVLSNLGSWLE-KHDCDFLIEGHADEL--GSRNS--SIALGLRRAYAVFNYFVA-RGISAS 121 (160)
Q Consensus 48 ~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~-~~~~~i~I~GhtD~~--Gs~~y--N~~LS~~RA~aV~~~L~~-~Gi~~~ 121 (160)
T Consensus 140 l~~~~lF~~GsA~l~~~~~~lL~~ia~~l~~~~~~~I~V~GHTD~~Pi~~~~~~sNWeLSaaRA~sV~~~L~~~~gi~~~ 219 (259)
T PRK07734 140 ILDNILFDSGKADVRLEDLPLAKEMSNLLVSNPPRNITISGHTDNVPIANAQFASNWELSVMRAVNFMQVLLENKELDPE 219 (259)
T ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 53776668898756977999999999999857996389998557766667767644899999999999999981699956
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHCCCEEEEEEE
Q ss_conf 699997074489899878779842991899997
Q gi|254780547|r 122 RMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLK 154 (160)
Q Consensus 122 ri~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~ 154 (160)
T Consensus 220 rl~v~G~gd~~Pi~~n~t~egra~NRRVeI~il 252 (259)
T PRK07734 220 KFSAKGYGEYKPIASNDTAEGRAKNRRVEVLIL 252 (259)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEE
T ss_conf 799998557874899969201421786799995