HHsearch alignment for GI: 254780547 and conserved domain: PRK07734

>PRK07734 motB flagellar motor protein MotB; Reviewed.
Probab=99.95  E-value=3.1e-28  Score=184.02  Aligned_cols=107  Identities=21%  Similarity=0.402  Sum_probs=96.1

Q ss_pred             HCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEEEECCCC--CCCCC--CCHHHHHHHHHHHHHHHH-CCCCCE
Q ss_conf             031002204752243247999999984302-560589999722665--33332--001113379999999985-289860
Q gi|254780547|r   48 VGDSVFFDTSSYSIRPADIQVLSNLGSWLE-KHDCDFLIEGHADEL--GSRNS--SIALGLRRAYAVFNYFVA-RGISAS  121 (160)
Q Consensus        48 ~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~-~~~~~i~I~GhtD~~--Gs~~y--N~~LS~~RA~aV~~~L~~-~Gi~~~  121 (160)
T Consensus       140 l~~~~lF~~GsA~l~~~~~~lL~~ia~~l~~~~~~~I~V~GHTD~~Pi~~~~~~sNWeLSaaRA~sV~~~L~~~~gi~~~  219 (259)
T PRK07734        140 ILDNILFDSGKADVRLEDLPLAKEMSNLLVSNPPRNITISGHTDNVPIANAQFASNWELSVMRAVNFMQVLLENKELDPE  219 (259)
T ss_pred             ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             53776668898756977999999999999857996389998557766667767644899999999999999981699956


Q ss_pred             EEEEEEECCCCCCCCCCCHHHHHCCCEEEEEEE
Q ss_conf             699997074489899878779842991899997
Q gi|254780547|r  122 RMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLK  154 (160)
Q Consensus       122 ri~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~  154 (160)
T Consensus       220 rl~v~G~gd~~Pi~~n~t~egra~NRRVeI~il  252 (259)
T PRK07734        220 KFSAKGYGEYKPIASNDTAEGRAKNRRVEVLIL  252 (259)
T ss_pred             EEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEE
T ss_conf             799998557874899969201421786799995