HHsearch alignment for GI: 254780547 and conserved domain: PRK09038
>PRK09038 flagellar motor protein MotD; Reviewed.
Probab=99.97 E-value=5.9e-31 Score=199.77 Aligned_cols=106 Identities=20% Similarity=0.389 Sum_probs=98.7
Q ss_pred HCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCC--CCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 031002204752243247999999984302560589999722665--33332--00111337999999998528986069
Q gi|254780547|r 48 VGDSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADEL--GSRNS--SIALGLRRAYAVFNYFVARGISASRM 123 (160)
Q Consensus 48 ~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~--Gs~~y--N~~LS~~RA~aV~~~L~~~Gi~~~ri 123 (160)
T Consensus 135 l~~~~lF~~GSA~L~~~~~~lL~~ia~~L~~~~n~I~I~GHTD~~Pi~~~~~~sNWeLSaaRA~aV~r~L~~~Gi~p~Rl 214 (285)
T PRK09038 135 INSSLLFGSGDALLSDEAFAILEKVAEVLKPFPNPIHVEGFTDNVPIATAQFPSNWELSAARAASVVRLLADDGVAPSRL 214 (285)
T ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHE
T ss_conf 56886868884324987999999999999843872899985788765556678648999999999999999759996787
Q ss_pred EEEEECCCCCCCCCCCHHHHHCCCEEEEEE
Q ss_conf 999707448989987877984299189999
Q gi|254780547|r 124 KVTSYGKEMPSVYGHDEDAYAKNRRAIVFL 153 (160)
Q Consensus 124 ~~~g~G~~~P~~~~~~~~~~~~NRRVei~i 153 (160)
T Consensus 215 ~~~Gygd~~P~~~N~t~egRa~NRRVeIvI 244 (285)
T PRK09038 215 AAVGYGEFQPVADNDTAEGRARNRRVVLVI 244 (285)
T ss_pred EEEEECCCCCCCCCCCCHHHHHCCCEEEEE
T ss_conf 998765787689994800253078769999