HHsearch alignment for GI: 254780547 and conserved domain: PRK09038

>PRK09038 flagellar motor protein MotD; Reviewed.
Probab=99.97  E-value=5.9e-31  Score=199.77  Aligned_cols=106  Identities=20%  Similarity=0.389  Sum_probs=98.7

Q ss_pred             HCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCC--CCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             031002204752243247999999984302560589999722665--33332--00111337999999998528986069
Q gi|254780547|r   48 VGDSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADEL--GSRNS--SIALGLRRAYAVFNYFVARGISASRM  123 (160)
Q Consensus        48 ~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~--Gs~~y--N~~LS~~RA~aV~~~L~~~Gi~~~ri  123 (160)
T Consensus       135 l~~~~lF~~GSA~L~~~~~~lL~~ia~~L~~~~n~I~I~GHTD~~Pi~~~~~~sNWeLSaaRA~aV~r~L~~~Gi~p~Rl  214 (285)
T PRK09038        135 INSSLLFGSGDALLSDEAFAILEKVAEVLKPFPNPIHVEGFTDNVPIATAQFPSNWELSAARAASVVRLLADDGVAPSRL  214 (285)
T ss_pred             ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHE
T ss_conf             56886868884324987999999999999843872899985788765556678648999999999999999759996787


Q ss_pred             EEEEECCCCCCCCCCCHHHHHCCCEEEEEE
Q ss_conf             999707448989987877984299189999
Q gi|254780547|r  124 KVTSYGKEMPSVYGHDEDAYAKNRRAIVFL  153 (160)
Q Consensus       124 ~~~g~G~~~P~~~~~~~~~~~~NRRVei~i  153 (160)
T Consensus       215 ~~~Gygd~~P~~~N~t~egRa~NRRVeIvI  244 (285)
T PRK09038        215 AAVGYGEFQPVADNDTAEGRARNRRVVLVI  244 (285)
T ss_pred             EEEEECCCCCCCCCCCCHHHHHCCCEEEEE
T ss_conf             998765787689994800253078769999