HHsearch alignment for GI: 254780547 and conserved domain: TIGR02802
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein; InterPro: IPR014169 Members in this entry represent the peptidoglycan-associated lipoprotein (Pal or OprL) protein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The entry represents only the conserved C-terminal domain..
Probab=100.00 E-value=2.8e-41 Score=259.55 Aligned_cols=103 Identities=45% Similarity=0.734 Sum_probs=99.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCE-EEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
Q ss_conf 002204752243247999999984302560-5899997226653333200111337999999998528986069999707
Q gi|254780547|r 51 SVFFDTSSYSIRPADIQVLSNLGSWLEKHD-CDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMKVTSYG 129 (160)
Q Consensus 51 ~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~-~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G 129 (160)
T Consensus 1 ~vyF~~D~~~l~~e~~~~l~~hA~~L~~~p~~~V~iEGH~DERGTrEYNlALGeRRA~AV~~yL~~~GV~~~q~~~vSYG 80 (104)
T TIGR02802 1 RVYFDFDSSDLKSEAQAILDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQAKGVSASQIETVSYG 80 (104)
T ss_pred CEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 94323581431779999999989999867993788863078888877777788999999999999738961100463026
Q ss_pred CCCCCCCCCCHHHHHCCCEEEEEE
Q ss_conf 448989987877984299189999
Q gi|254780547|r 130 KEMPSVYGHDEDAYAKNRRAIVFL 153 (160)
Q Consensus 130 ~~~P~~~~~~~~~~~~NRRVei~i 153 (160)
T Consensus 81 kErP~~~G~~E~~wakNRR~~~vy 104 (104)
T TIGR02802 81 KERPAALGHDEAAWAKNRRAVLVY 104 (104)
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 656877898857775405310049