HHsearch alignment for GI: 254780547 and conserved domain: cd07185
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=99.97 E-value=3e-30 Score=195.67 Aligned_cols=104 Identities=35% Similarity=0.553 Sum_probs=99.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCE-EEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 1002204752243247999999984302560-589999722665333320011133799999999852898606999970
Q gi|254780547|r 50 DSVFFDTSSYSIRPADIQVLSNLGSWLEKHD-CDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMKVTSY 128 (160)
Q Consensus 50 ~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~-~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~ 128 (160)
T Consensus 2 ~~v~F~~~s~~l~~~~~~~L~~ia~~l~~~~~~~v~v~GhtD~~G~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~~~g~ 81 (106)
T cd07185 2 ITIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGY 81 (106)
T ss_pred EEEEECCCCCEECHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEE
T ss_conf 89996899776198899999999999985899379999984899998998999999999999999984999899899997
Q ss_pred CCCCCCCCCCCHHHHHCCCEEEEEE
Q ss_conf 7448989987877984299189999
Q gi|254780547|r 129 GKEMPSVYGHDEDAYAKNRRAIVFL 153 (160)
Q Consensus 129 G~~~P~~~~~~~~~~~~NRRVei~i 153 (160)
T Consensus 82 G~~~p~~~~~~~~~~~~NRRVei~~ 106 (106)
T cd07185 82 GESRPIASNDTEEGRAKNRRVEIVI 106 (106)
T ss_pred CCCCCCCCCCCHHHHHHCCCEEEEC
T ss_conf 5557689990988998559889969