HHsearch alignment of GI: 254780547 and MMDB domain: 2zf8_A_155-278
>2zf8_A (A:155-278) MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}
Probab=99.95 E-value=6.2e-29 Score=187.67 Aligned_cols=112 Identities=22% Similarity=0.354 Sum_probs=104.2
Q ss_pred HHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-EE-EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 5203100220475224324799999998430256-05-899997226653333200111337999999998528986069
Q gi|254780547|r 46 SSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DC-DFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRM 123 (160)
Q Consensus 46 ~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~-~~-~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri 123 (160)
..+...++|++|++.|+++++..|+.++.+|+.+ +. .|.|+||||..|+.+||+.||.+||.+|++||+..||++++|
T Consensus 4 ~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~L~~~~~~~~I~I~Ghtd~~g~~~~n~~LS~~RA~~V~~~l~~~Gi~~~ri 83 (124)
T 2zf8_A 4 DIAFTILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDRI 83 (124)
T ss_dssp TSEEEECBSSSSSSSBCHHHHHHHHHHHHHHTTCCSCCEEEEEEC-------CCCHHHHHHHHHHHHHHHHHHSCCTTSE
T ss_pred HEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHE
T ss_conf 50152899389971169999999999999998689965899998748999878879999999999999999859997998
Q ss_pred EEEEECCCCCCCCCCCHHHHHCCCEEEEEEEECC
Q ss_conf 9997074489899878779842991899997136
Q gi|254780547|r 124 KVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKGCR 157 (160)
Q Consensus 124 ~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~~~ 157 (160)
.+.|||+.+|++++.+++++++||||||+|..-.
T Consensus 84 ~~~g~G~~~p~~~~~~~~~~~~NRRVeI~i~~~~ 117 (124)
T 2zf8_A 84 QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 117 (124)
T ss_dssp ECCEEC------------------CEEEECCCCC
T ss_pred EEEEECCCCCCCCCCCHHHHHHCCCEEEEEEEEE
T ss_conf 9999756577799949889973498999998679