HHSEARCH alignment of GI: 254780547 and SCOP domain: d1r1ma_

Alignment
>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=99.96  E-value=5.3e-30  Score=191.57  Aligned_cols=111  Identities=29%  Similarity=0.371  Sum_probs=101.7

Q ss_pred             HHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             5203100220475224324799999998430256-058999972266533332001113379999999985289860699
Q gi|254780547|r   46 SSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMK  124 (160)
Q Consensus        46 ~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~-~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~  124 (160)
                      ..++..+||++||+.|++++++.|+.++.+|+++ ..+|.|+||||.+|+.+||+.||++||++|++||++.|++++||.
T Consensus         8 i~l~~~~~F~~~s~~l~~~~~~~L~~l~~~l~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~   87 (140)
T d1r1ma_           8 ISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRIS   87 (140)
T ss_dssp             EEEEHHHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred             EEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             99777306628974279899999999999872199708999986065442121036788999999999997599937599


Q ss_pred             EEEECCCCCCCCCCCHHHHHC--------------------CCEEEEEEEEC
Q ss_conf             997074489899878779842--------------------99189999713
Q gi|254780547|r  125 VTSYGKEMPSVYGHDEDAYAK--------------------NRRAIVFLKGC  156 (160)
Q Consensus       125 ~~g~G~~~P~~~~~~~~~~~~--------------------NRRVei~i~~~  156 (160)
                      +.|||+++|+..+.++.+++.                    ||||||.|+..
T Consensus        88 ~~g~Ge~~P~~~n~~~~~~~~~~~~~~~~~nr~~~i~~~~~nRRVEi~v~~~  139 (140)
T d1r1ma_          88 AVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRRVDVKIRSI  139 (140)
T ss_dssp             EEECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHHHHHHTGGGSEEEEEEEEE
T ss_pred             EEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf             9997257877889698898530220123320255550468998589999825


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: OmpA-like
family: OmpA-like
domain: Outer membrane protein class 4, RmpM, C-terminal domain
species: Neisseria meningitidis [TaxId: 487]