Query gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] Match_columns 160 No_of_seqs 126 out of 4755 Neff 8.2 Searched_HMMs 13730 Date Wed Jun 1 10:28:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780547.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2aizp1 d.79.7.1 (P:1-134) Pep 100.0 6.1E-31 4.5E-35 197.0 11.6 104 50-153 30-134 (134) 2 d2hqsc1 d.79.7.1 (C:68-173) Pe 100.0 3.4E-30 2.5E-34 192.7 9.3 103 50-152 2-105 (106) 3 d1r1ma_ d.79.7.1 (A:) Outer me 100.0 5.3E-30 3.9E-34 191.6 7.3 111 46-156 8-139 (140) 4 d1gvha3 c.25.1.5 (A:254-396) F 62.6 3.3 0.00024 19.1 3.3 28 105-132 114-141 (143) 5 d1cqxa3 c.25.1.5 (A:262-403) F 60.2 2.4 0.00017 19.9 2.2 29 104-132 111-139 (142) 6 d1qy7a_ d.58.5.1 (A:) PII (pro 58.4 4.4 0.00032 18.4 3.3 54 103-156 10-68 (112) 7 d2ns1b1 d.58.5.1 (B:1-112) PII 55.9 6 0.00044 17.6 3.7 54 103-156 10-68 (112) 8 d1krha2 c.25.1.2 (A:206-338) B 51.5 7.3 0.00053 17.1 3.8 27 105-131 107-133 (133) 9 d1tvca2 c.25.1.2 (A:111-251) M 48.0 5.7 0.00042 17.7 2.6 26 106-131 113-138 (141) 10 d1z2la1 c.56.5.4 (A:4-212,A:33 41.5 10 0.00076 16.2 6.4 56 79-134 70-128 (293) 11 d3tgla_ c.69.1.17 (A:) Triacyl 34.7 13 0.00098 15.6 6.3 54 72-138 122-178 (265) 12 d2piia_ d.58.5.1 (A:) PII (pro 32.5 15 0.0011 15.3 4.6 54 103-156 10-68 (112) 13 d2eyqa2 c.37.1.19 (A:349-465) 28.9 8.3 0.0006 16.8 0.9 48 63-123 17-64 (117) 14 d2cz4a1 d.58.5.1 (A:1-100) Hyp 26.9 18 0.0013 14.8 4.2 48 104-155 16-64 (100) 15 d1tiaa_ c.69.1.17 (A:) Triacyl 20.4 25 0.0018 14.0 6.1 55 69-138 124-179 (271) 16 d1vfja_ d.58.5.1 (A:) PII (pro 20.3 25 0.0018 14.0 4.6 54 103-156 10-68 (116) No 1 >d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Haemophilus influenzae [TaxId: 727]} Probab=99.97 E-value=6.1e-31 Score=197.02 Aligned_cols=104 Identities=40% Similarity=0.714 Sum_probs=99.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCC-EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE Q ss_conf 100220475224324799999998430256-0589999722665333320011133799999999852898606999970 Q gi|254780547|r 50 DSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMKVTSY 128 (160) Q Consensus 50 ~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~-~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~ 128 (160) ..|||++||+.|+++++..|+.++.+|+.+ +.+|.|.||||..|+.+||+.||++||++|++||+++||+++||.+.|| T Consensus 30 ~~I~F~~~s~~L~~~~~~~L~~la~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~~~g~ 109 (134) T d2aizp1 30 NTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSY 109 (134) T ss_dssp CEEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC T ss_pred CEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC T ss_conf 81883799812498899999999999986999689996043433221110137899999999899771875345513775 Q ss_pred CCCCCCCCCCCHHHHHCCCEEEEEE Q ss_conf 7448989987877984299189999 Q gi|254780547|r 129 GKEMPSVYGHDEDAYAKNRRAIVFL 153 (160) Q Consensus 129 G~~~P~~~~~~~~~~~~NRRVei~i 153 (160) |+++|+.++.++++|++||||||+. T Consensus 110 G~~~P~~~~~~~~~~~~NRRVeiv~ 134 (134) T d2aizp1 110 GEEKPAVLGHDEAAYSKNRRAVLAY 134 (134) T ss_dssp TTTSCSSCSCSHHHHHHHSEEEEEC T ss_pred CCCCCCCCCCCHHHHHCCCCEEEEC T ss_conf 4337578891977986239899959 No 2 >d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Escherichia coli [TaxId: 562]} Probab=99.96 E-value=3.4e-30 Score=192.69 Aligned_cols=103 Identities=45% Similarity=0.745 Sum_probs=99.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCC-EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE Q ss_conf 100220475224324799999998430256-0589999722665333320011133799999999852898606999970 Q gi|254780547|r 50 DSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMKVTSY 128 (160) Q Consensus 50 ~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~-~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~ 128 (160) +.|||++||++|++++...|+.++.+|+.+ +.+|.|+||||..|+.+||+.||++||++|++||++.||++++|.+.|| T Consensus 2 ~~iyF~~~s~~l~~~~~~~L~~l~~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~~~g~ 81 (106) T d2hqsc1 2 NIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSY 81 (106) T ss_dssp CEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 98994799773898899999999999986899579998433422104666558899876799999866986644899983 Q ss_pred CCCCCCCCCCCHHHHHCCCEEEEE Q ss_conf 744898998787798429918999 Q gi|254780547|r 129 GKEMPSVYGHDEDAYAKNRRAIVF 152 (160) Q Consensus 129 G~~~P~~~~~~~~~~~~NRRVei~ 152 (160) |+++|++++.+++++++||||||+ T Consensus 82 G~~~p~~~~~~~~~~~~NRRVeii 105 (106) T d2hqsc1 82 GKEKPAVLGHDEAAYSKNRRAVLV 105 (106) T ss_dssp TTSSCSSCSSSHHHHHHHSEEEEE T ss_pred CCCCCCCCCCCHHHHHHCCCEEEE T ss_conf 564767899097799714949996 No 3 >d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-terminal domain {Neisseria meningitidis [TaxId: 487]} Probab=99.96 E-value=5.3e-30 Score=191.57 Aligned_cols=111 Identities=29% Similarity=0.371 Sum_probs=101.7 Q ss_pred HHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 5203100220475224324799999998430256-058999972266533332001113379999999985289860699 Q gi|254780547|r 46 SSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMK 124 (160) Q Consensus 46 ~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~-~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~ 124 (160) ..++..+||++||+.|++++++.|+.++.+|+++ ..+|.|+||||.+|+.+||+.||++||++|++||++.|++++||. T Consensus 8 i~l~~~~~F~~~s~~l~~~~~~~L~~l~~~l~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~ 87 (140) T d1r1ma_ 8 ISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRIS 87 (140) T ss_dssp EEEEHHHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE T ss_pred EEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 99777306628974279899999999999872199708999986065442121036788999999999997599937599 Q ss_pred EEEECCCCCCCCCCCHHHHHC--------------------CCEEEEEEEEC Q ss_conf 997074489899878779842--------------------99189999713 Q gi|254780547|r 125 VTSYGKEMPSVYGHDEDAYAK--------------------NRRAIVFLKGC 156 (160) Q Consensus 125 ~~g~G~~~P~~~~~~~~~~~~--------------------NRRVei~i~~~ 156 (160) +.|||+++|+..+.++.+++. ||||||.|+.. T Consensus 88 ~~g~Ge~~P~~~n~~~~~~~~~~~~~~~~~nr~~~i~~~~~nRRVEi~v~~~ 139 (140) T d1r1ma_ 88 AVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRRVDVKIRSI 139 (140) T ss_dssp EEECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHHHHHHTGGGSEEEEEEEEE T ss_pred EEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEC T ss_conf 9997257877889698898530220123320255550468998589999825 No 4 >d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=62.57 E-value=3.3 Score=19.08 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCC Q ss_conf 7999999998528986069999707448 Q gi|254780547|r 105 RAYAVFNYFVARGISASRMKVTSYGKEM 132 (160) Q Consensus 105 RA~aV~~~L~~~Gi~~~ri~~~g~G~~~ 132 (160) -.++|.++|.+.|++.++|....||.++ T Consensus 114 m~~~v~~~L~~~G~~~~~i~~E~F~~~~ 141 (143) T d1gvha3 114 FMQFTAKQLVDLGVKQENIHYECFGPHK 141 (143) T ss_dssp HHHHHHHHHHHTTCCGGGEEEECSSSCC T ss_pred HHHHHHHHHHHCCCCHHHEEEECCCCCC T ss_conf 9999999999859999998986468975 No 5 >d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Probab=60.23 E-value=2.4 Score=19.93 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=25.5 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECCCC Q ss_conf 37999999998528986069999707448 Q gi|254780547|r 104 RRAYAVFNYFVARGISASRMKVTSYGKEM 132 (160) Q Consensus 104 ~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~ 132 (160) .-.++|++.|.+.|+++++|....||.+. T Consensus 111 ~m~~~v~~~L~~~G~~~~~i~~E~Fg~~~ 139 (142) T d1cqxa3 111 PFMRMQHDALKNLGIHEARIHYEVFGPDL 139 (142) T ss_dssp HHHHHHHHHHHHTTCCGGGEEECCCSSCT T ss_pred HHHHHHHHHHHHCCCCHHHEEEEECCCCC T ss_conf 68999999999859988879997158986 No 6 >d1qy7a_ d.58.5.1 (A:) PII (product of glnB) {Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]} Probab=58.40 E-value=4.4 Score=18.39 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHCCCCCE-EEEEEEECCCCCCCCCCCHH----HHHCCCEEEEEEEEC Q ss_conf 3379999999985289860-69999707448989987877----984299189999713 Q gi|254780547|r 103 LRRAYAVFNYFVARGISAS-RMKVTSYGKEMPSVYGHDED----AYAKNRRAIVFLKGC 156 (160) Q Consensus 103 ~~RA~aV~~~L~~~Gi~~~-ri~~~g~G~~~P~~~~~~~~----~~~~NRRVei~i~~~ 156 (160) ..|.+.|++.|.+.|++.= -.++.|+|............ ..-.-+++|++++.- T Consensus 10 p~k~~~v~~AL~~~G~~g~Tv~~v~G~G~~~g~~~~~~~~~~~~~~~~k~~ieivv~d~ 68 (112) T d1qy7a_ 10 PFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGAEYTVEFLQKLKLEIVVEDA 68 (112) T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEEEEEECCCSSCTTSSEEEEEEEEEEEEEEECGG T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEECCCEEEECCCCEEEEEEEECHH T ss_conf 89999999999967997689964288757788542234613351205459999998789 No 7 >d2ns1b1 d.58.5.1 (B:1-112) PII-homolog GlnK {Shigella flexneri [TaxId: 623]} Probab=55.93 E-value=6 Score=17.59 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=32.8 Q ss_pred HHHHHHHHHHHHHCCCCCE-EEEEEEECCCCCCCCCC---C-HHHHHCCCEEEEEEEEC Q ss_conf 3379999999985289860-69999707448989987---8-77984299189999713 Q gi|254780547|r 103 LRRAYAVFNYFVARGISAS-RMKVTSYGKEMPSVYGH---D-EDAYAKNRRAIVFLKGC 156 (160) Q Consensus 103 ~~RA~aV~~~L~~~Gi~~~-ri~~~g~G~~~P~~~~~---~-~~~~~~NRRVei~i~~~ 156 (160) -.|.+.|++.|.+.|++.= -..+.|+|...+..... . ....-.-.++|++++.- T Consensus 10 p~k~~~V~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~ 68 (112) T d2ns1b1 10 PFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADD 68 (112) T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGG T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCEEEEEEEEEEEEEEEECHH T ss_conf 89999999999978997189997205315678641443630132111178999998549 No 8 >d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Probab=51.51 E-value=7.3 Score=17.11 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCC Q ss_conf 799999999852898606999970744 Q gi|254780547|r 105 RAYAVFNYFVARGISASRMKVTSYGKE 131 (160) Q Consensus 105 RA~aV~~~L~~~Gi~~~ri~~~g~G~~ 131 (160) -.++|++.|.+.|+++++|....||.+ T Consensus 107 m~~~v~~~L~~~Gv~~~~i~~E~F~~s 133 (133) T d1krha2 107 MVEAVRSWLDTQGIQPANFLFEKFSAN 133 (133) T ss_dssp HHHHHHHHHHHHTCCCSEEEEEEECCC T ss_pred HHHHHHHHHHHCCCCHHHEEEEECCCC T ss_conf 999999999985999899899834599 No 9 >d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Probab=47.95 E-value=5.7 Score=17.70 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=23.3 Q ss_pred HHHHHHHHHHCCCCCEEEEEEEECCC Q ss_conf 99999999852898606999970744 Q gi|254780547|r 106 AYAVFNYFVARGISASRMKVTSYGKE 131 (160) Q Consensus 106 A~aV~~~L~~~Gi~~~ri~~~g~G~~ 131 (160) .++|++.|.+.|+++++|....||.+ T Consensus 113 ~~~v~~~l~~~Gv~~~~i~~E~F~~~ 138 (141) T d1tvca2 113 IDAACELVRSRGIPGEQVFFEKFLPS 138 (141) T ss_dssp HHHHHHHHHHHCCCCSEEEECCCSSS T ss_pred HHHHHHHHHHCCCCHHHEEEEECCCC T ss_conf 99999999983999899788746477 No 10 >d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Probab=41.53 E-value=10 Score=16.19 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=39.2 Q ss_pred CEEEEEE-EEECCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCE-EEEEEEECCCCCC Q ss_conf 6058999-9722665-33332001113379999999985289860-6999970744898 Q gi|254780547|r 79 HDCDFLI-EGHADEL-GSRNSSIALGLRRAYAVFNYFVARGISAS-RMKVTSYGKEMPS 134 (160) Q Consensus 79 ~~~~i~I-~GhtD~~-Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~-ri~~~g~G~~~P~ 134 (160) ++...++ -+|-|.. ..-.|.-.|+--=+..+...|.+.|+.+. .|.++.|..++.. T Consensus 70 ~~~~~v~iGSHlDtV~~gG~~Dg~~Gv~a~le~~~~l~~~~~~~~~~i~vv~f~~EEg~ 128 (293) T d1z2la1 70 YPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGS 128 (293) T ss_dssp EEEEEEEEEEECCCCTTBCSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCC T ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC T ss_conf 87762686220265898888787402799999987787608878999611221146456 No 11 >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} Probab=34.71 E-value=13 Score=15.56 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=36.7 Q ss_pred HHHHHCC-CEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCCEEEEEEEECCCCCCCCCC Q ss_conf 9843025-60589999722665333320011133799999999852--8986069999707448989987 Q gi|254780547|r 72 LGSWLEK-HDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVAR--GISASRMKVTSYGKEMPSVYGH 138 (160) Q Consensus 72 ia~~l~~-~~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~--Gi~~~ri~~~g~G~~~P~~~~~ 138 (160) +...+++ ++.+|.|.||. |+-.=|.-..-+|... +++..++.+..||. |..-+. T Consensus 122 i~~~~~~~~~~~i~vtGHS-----------LGGAlA~L~a~~l~~~~~~~~~~~i~~~TFG~--PrvGn~ 178 (265) T d3tgla_ 122 VLDQFKQYPSYKVAVTGHS-----------LGGATVLLCALDLYQREEGLSSSNLFLYTQGQ--PRVGDP 178 (265) T ss_dssp HHHHHHHCTTSEEEEEEET-----------HHHHHHHHHHHHHHHTCSSCCTTTEEEEEESC--CCCBCH T ss_pred HHHHHHHCCCCEEEEECCC-----------CHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC--CCCCCH T ss_conf 9999976899469984254-----------10789999999998733256754343453489--835888 No 12 >d2piia_ d.58.5.1 (A:) PII (product of glnB) {Escherichia coli [TaxId: 562]} Probab=32.49 E-value=15 Score=15.34 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=33.4 Q ss_pred HHHHHHHHHHHHHCCCCC-EEEEEEEECCCCCCCCCC---CH-HHHHCCCEEEEEEEEC Q ss_conf 337999999998528986-069999707448989987---87-7984299189999713 Q gi|254780547|r 103 LRRAYAVFNYFVARGISA-SRMKVTSYGKEMPSVYGH---DE-DAYAKNRRAIVFLKGC 156 (160) Q Consensus 103 ~~RA~aV~~~L~~~Gi~~-~ri~~~g~G~~~P~~~~~---~~-~~~~~NRRVei~i~~~ 156 (160) -.|.++|++.|.+.|++. .-..+.|+|...+..... +. ...-.-+++|++++.. T Consensus 10 p~kl~~v~~aL~~~Gv~g~Tv~~v~G~G~~~~~~~~~~~~~~~~~~~~k~~ieivv~d~ 68 (112) T d2piia_ 10 PFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVKIEIVVPDD 68 (112) T ss_dssp GGGHHHHHHHHHHHTCCCCEEEEEEECSCCTTCCCSCCCCSSCCCCEEEEEEEEEECGG T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEECCEEECCCCCEEEEEEEECHH T ss_conf 89999999999968998599997427887555333340420030315357999998838 No 13 >d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Probab=28.91 E-value=8.3 Score=16.79 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=32.7 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 2479999999843025605899997226653333200111337999999998528986069 Q gi|254780547|r 63 PADIQVLSNLGSWLEKHDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRM 123 (160) Q Consensus 63 ~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri 123 (160) ....+.++.+..|+++.+.+|+|.-+ |..|++...+.|.+.||++..+ T Consensus 17 ~~~~~p~~~L~~~i~~~~~~Vli~a~-------------s~g~~erl~e~L~~~~i~~~~~ 64 (117) T d2eyqa2 17 AQQKAPLDALRKFLETFDGPVVFSVE-------------SEGRREALGELLARIKIAPQRI 64 (117) T ss_dssp SSSSSTTHHHHHHHTTCCSCCCEEES-------------SHHHHHHHHHHHGGGTCCCEEC T ss_pred CCHHCHHHHHHHHHHHCCCEEEEEEC-------------CCCHHHHHHHHHHHCCCCCEEE T ss_conf 02136999999999958983999979-------------9657999999999769982570 No 14 >d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus thermophilus [TaxId: 274]} Probab=26.88 E-value=18 Score=14.77 Aligned_cols=48 Identities=8% Similarity=-0.080 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHCCCCCEE-EEEEEECCCCCCCCCCCHHHHHCCCEEEEEEEE Q ss_conf 3799999999852898606-999970744898998787798429918999971 Q gi|254780547|r 104 RRAYAVFNYFVARGISASR-MKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKG 155 (160) Q Consensus 104 ~RA~aV~~~L~~~Gi~~~r-i~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~ 155 (160) .+++.|.+.|.+.|++.=- ..+.|+|........ .+..|=|+|+++.. T Consensus 16 ~~~~~v~~~L~~~Gv~G~Tv~~v~G~G~~~~~~~~----~~g~~v~Ieivv~~ 64 (100) T d2cz4a1 16 LLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVD----WEGQNIRLETIVSE 64 (100) T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSC----STTCEEEEEEEECH T ss_pred HHHHHHHHHHHHCCCCCEEEEECEEECCCCCCCCC----CCCCEEEEEEEECH T ss_conf 88999999999789974699958898447877354----80422899999888 No 15 >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} Probab=20.42 E-value=25 Score=14.02 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=34.6 Q ss_pred HHHHHHHHCC-CEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC Q ss_conf 9999843025-605899997226653333200111337999999998528986069999707448989987 Q gi|254780547|r 69 LSNLGSWLEK-HDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMKVTSYGKEMPSVYGH 138 (160) Q Consensus 69 L~~ia~~l~~-~~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~P~~~~~ 138 (160) ++.+...+.+ ++.+|.|.||. |+-.=|.-..-+|...+.+ .+.+..||. |..-+. T Consensus 124 ~~~i~~~~~~~~~~~i~iTGHS-----------LGGAlA~L~a~~l~~~~~~--~~~~~tfG~--PrvGn~ 179 (271) T d1tiaa_ 124 IKELKEVVAQNPNYELVVVGHS-----------LGAAVATLAATDLRGKGYP--SAKLYAYAS--PRVGNA 179 (271) T ss_pred HHHHHHHHHHCCCCEEEEECCC-----------HHHHHHHHHHHHHHHCCCC--CCEEEEECC--CCCCCH T ss_conf 9999999976899369985252-----------6899999999999872898--630798379--973789 No 16 >d1vfja_ d.58.5.1 (A:) PII (product of glnB) {Thermus thermophilus [TaxId: 274]} Probab=20.32 E-value=25 Score=14.01 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=31.9 Q ss_pred HHHHHHHHHHHHHCCCCCE-EEEEEEECCCCCCCC---CCC-HHHHHCCCEEEEEEEEC Q ss_conf 3379999999985289860-699997074489899---878-77984299189999713 Q gi|254780547|r 103 LRRAYAVFNYFVARGISAS-RMKVTSYGKEMPSVY---GHD-EDAYAKNRRAIVFLKGC 156 (160) Q Consensus 103 ~~RA~aV~~~L~~~Gi~~~-ri~~~g~G~~~P~~~---~~~-~~~~~~NRRVei~i~~~ 156 (160) -.|...|++.|.+.|++.= -..+.|+|...+... +.. ......-+++|++++.- T Consensus 10 p~kl~~V~~aL~~~Gv~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~ 68 (116) T d1vfja_ 10 PEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEP 68 (116) T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGG T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEECHH T ss_conf 89999999999868998589994070477654432022427772017745899998589 Done!