RPSBLAST alignment for GI: 254780547 and conserved domain: TIGR03350

>gnl|CDD|132393 TIGR03350, type_VI_ompA, type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. Length = 137

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 54  FDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADELGSRNSSIA----LGLRRAYAV 109
           F + S  +R     +L  +   L        + GH D +  R S       L   RA AV
Sbjct: 34  FASGSAEVRADFEPLLDRIAKALAAVPGRITVVGHTDNVPIRTSRFPSNWHLSEARAKAV 93

Query: 110 FNYFVARGISASRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFL 153
            +     G+ A R++    G   P          A+NRR  + +
Sbjct: 94  ADVLAQGGVPAGRVRAEGRGDSEPIASNATAAGRAQNRRVEIDV 137