RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus
Liberibacter asiaticus str. psy62]
         (160 letters)



>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM,
           C-terminal domain {Neisseria meningitidis [TaxId: 487]}
          Length = 140

 Score = 72.2 bits (176), Expect = 2e-14
 Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 47  SVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DCDFLIEGHADELGSRNSSIALGLRR 105
           S+     F     S+R      L  L   L +       +EGH D +GS   + AL  RR
Sbjct: 9   SLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERR 68

Query: 106 AYAVFNYFVARGISASRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKGCRA 158
           AY V N  V+ G+  SR+     G+    +    E   AK    +   K   A
Sbjct: 69  AYVVANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREA 121


>d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein,
           PAL, periplasmic domain {Escherichia coli [TaxId: 562]}
          Length = 106

 Score = 67.8 bits (165), Expect = 4e-13
 Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 50  DSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DCDFLIEGHADELGSRNSSIALGLRRAYA 108
           + V+FD   Y IR    Q+L    ++L  +      +EGHADE G+   +I+LG RRA A
Sbjct: 2   NIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANA 61

Query: 109 VFNYFVARGISASRMKVTSYGKEMPSVYGHDEDAYAKNRRA-IVF 152
           V  Y   +G+SA ++ + SYGKE P+V GHDE AY+KNRRA +V+
Sbjct: 62  VKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY 106


>d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein,
           PAL, periplasmic domain {Haemophilus influenzae [TaxId:
           727]}
          Length = 134

 Score = 63.7 bits (154), Expect = 8e-12
 Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 7/120 (5%)

Query: 35  LNESSLQEQFSSSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DCDFLIEGHADELG 93
            + + LQ+++     ++V+F    Y I    +Q+L    ++L        L+EG+ DE G
Sbjct: 20  YSVADLQQRY-----NTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERG 74

Query: 94  SRNSSIALGLRRAYAVFNYFVARGISASRMKVTSYGKEMPSVYGHDEDAYAKNRRA-IVF 152
           +   +IALG RRA AV  Y   +G+ A ++   SYG+E P+V GHDE AY+KNRRA + +
Sbjct: 75  TPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY 134


>g1wht.1 c.69.1.5 (A:,B:) Serine carboxypeptidase II {Wheat
           (Triticum vulgare) [TaxId: 4565]}
          Length = 409

 Score = 26.3 bits (57), Expect = 1.3
 Identities = 8/40 (20%), Positives = 17/40 (42%)

Query: 45  SSSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFL 84
            SSV      +  ++ ++P    ++ N   W +  +  FL
Sbjct: 61  CSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFL 100


>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 198

 Score = 25.2 bits (55), Expect = 2.9
 Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)

Query: 56  TSSYSIRPADIQVLSNLGSWLE---KHDCDFLIEGHADELGSR 95
            + Y I P D++ +     WL        + +       L  R
Sbjct: 92  CAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSVSGLTER 134


>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
           subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 217

 Score = 25.3 bits (55), Expect = 2.9
 Identities = 5/69 (7%), Positives = 20/69 (28%), Gaps = 6/69 (8%)

Query: 22  DNLDTKISSPDTVLNESSLQEQFSSSVGDSVFF-----DTSSYSIRPADIQVLS-NLGSW 75
           +           V++ S  +    +   +  F      + +       +I+ +   +   
Sbjct: 143 ELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDINIEDVKAYIKKV 202

Query: 76  LEKHDCDFL 84
             +   ++L
Sbjct: 203 EPREAQEYL 211


>g1gxs.1 c.69.1.5 (A:,B:) Hydroxynitrile lyase {Sorghum (Sorghum
           bicolor) [TaxId: 4558]}
          Length = 425

 Score = 25.2 bits (54), Expect = 3.1
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 45  SSSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFL 84
            SS+G     +  ++ +      +L N  +W +  +  F 
Sbjct: 63  CSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFA 102


>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine
           synthase, catalytic domain {Yeast (Saccharomyces
           kluyveri) [TaxId: 4934]}
          Length = 322

 Score = 23.5 bits (50), Expect = 9.8
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 64  ADIQVLSNLGSWLEKHDCDFLIEGHADE---LGSRNSSIALGLRRAYAVFNYFVARGISA 120
            +I  + +  +  ++++ D   E H ++   L   N +I +        F+      +S 
Sbjct: 185 KNIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIGIVTGVQAVNFHEVCIECVSR 244

Query: 121 SRMKVTSYG--KEMPSVYGHD 139
           S          +++ S  GHD
Sbjct: 245 SAFAQFKKDQVRQIWSGAGHD 265


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,299
Number of extensions: 22349
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 8
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)