HHsearch alignment for GI: 254780548 and conserved domain: COG1770
>COG1770 PtrB Protease II [Amino acid transport and metabolism].
Probab=97.69 E-value=0.0039 Score=38.06 Aligned_cols=209 Identities=12% Similarity=0.131 Sum_probs=101.3
Q ss_pred CCCEEEEEECCCCCCCCEEEEEECC-CCCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCC-CCCCCCEEEECC-CCCE
Q ss_conf 4417887513676442100123114-554026886217640234557689984899850346-764430377117-9717
Q gi|254780548|r 174 NSRILFVSESVVSGIIKNSLCVMDR-DGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE-DILRVYLMDTRI-DRAP 250 (447)
Q Consensus 174 ~triafv~~~~~~~~~~~~l~i~d~-DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~-~~~~i~~~~~~~-g~~~ 250 (447)
T Consensus 140 ~~~la~s~D~--~G~e~y~lr~kdL~tg~~---~~d~i~~~~~~~~Wa~d~~tlfYt~~d~~~rp~kv~~h~~gt~~~~d 214 (682)
T COG1770 140 HNLLAYSVDV--LGDEQYTLRFKDLATGEE---LPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSD 214 (682)
T ss_pred CCEEEEEEEC--CCCEEEEEEEEECCCCCC---CCHHHCCCCCCEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCC
T ss_conf 8669999814--675189999998665562---31222265552499578977999996788994048988448887762
Q ss_pred EEEECCCC--CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCC--CCCC-CCCCCCC--------------------
Q ss_conf 99743798--524445515895567741378730389984047741--1002-5776432--------------------
Q gi|254780548|r 251 KRIGNFRS--MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNAT--ERLT-NTLFINI-------------------- 305 (447)
Q Consensus 251 ~~~~~~~~--~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~--~~lT-~~~~~d~-------------------- 305 (447)
T Consensus 215 ~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf 294 (682)
T COG1770 215 ELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNF 294 (682)
T ss_pred EEEEECCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCE
T ss_conf 48897179848999754267765999837875046999855789875589987578847755416868999946888743
Q ss_pred ----CEE------EE-----CC----------CCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCC-CEE-EEEECCCC
Q ss_conf ----025------52-----16----------74789972377653315764025674111220353-000-04687768
Q gi|254780548|r 306 ----SAS------YS-----PD----------SSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEA-SYF-DPVWSPQG 358 (447)
Q Consensus 306 ----~p~------~s-----pD----------G~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~-~~~-~p~wSPdG 358 (447)
T Consensus 295 ~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s 374 (682)
T COG1770 295 KLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDS 374 (682)
T ss_pred EEEECCCCCCHHCCEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEEECCCCCEEEEEECCHHHHCCCCCCCCCCC
T ss_conf 79976578883018154046888365446613357999851368745999854788533587164233101357777778
Q ss_pred CEEEE--EECCCCCEEEEEEECCCCCEEEEEC
Q ss_conf 88999--9714991579999889996799662
Q gi|254780548|r 359 DLIAF--TKFSGEKFAIGVMKKDGSQERLLVE 388 (447)
Q Consensus 359 ~~Iaf--~~~~~~~~~i~~~~~~g~~~~~lt~ 388 (447)
T Consensus 375 ~~lR~~ysS~tt-P~~~~~~dm~t~er~~Lkq 405 (682)
T COG1770 375 DRLRYSYSSMTT-PATLFDYDMATGERTLLKQ 405 (682)
T ss_pred CCEEEEEECCCC-CCEEEEEECCCCCEEEEEE
T ss_conf 618997512356-6203765616790777875