HHsearch alignment for GI: 254780548 and conserved domain: COG4590
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=90.52 E-value=0.98 Score=22.00 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=65.5
Q ss_pred EECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCEE-----EEEECCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 57689984899850346764430377117971799743798524-----4455158955677413787303899840477
Q gi|254780548|r 218 RFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL-----APRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 (447)
Q Consensus 218 ~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~-----~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~ 292 (447)
T Consensus 227 lL~Pdg~~L-Yv~--~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~ 303 (733)
T COG4590 227 LLTPDGKTL-YVR--TGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ 303 (733)
T ss_pred EECCCCCEE-EEE--CCCEEEEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCC
T ss_conf 788898789-996--18768887600365204445433998358899999998717616999868874002133204898
Q ss_pred CCCCCCCCCCCCCC--EEEECCCCEEEEEE-CCCCCCCEEEEEECCCCCCEEEEECCCC-EEEEEECCCCCEEEEEECCC
Q ss_conf 41100257764320--25521674789972-3776533157640256741112203530-00046877688899997149
Q gi|254780548|r 293 ATERLTNTLFINIS--ASYSPDSSQIVFES-DREGKEQLYVMQSNGSDQKRISQDKEAS-YFDPVWSPQGDLIAFTKFSG 368 (447)
Q Consensus 293 ~~~~lT~~~~~d~~--p~~spDG~~I~f~S-dr~G~~qiy~~~~~g~~~~rlT~~~~~~-~~~p~wSPdG~~Iaf~~~~~ 368 (447)
T Consensus 304 p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~----st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~--e~~ 377 (733)
T COG4590 304 PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFY----STSEKLLLFERAYQAPQLVAMSPNQAYLLS--EDQ 377 (733)
T ss_pred CCCEEEECCCCCCCCCEEECCCCCCCEEEEECCCCCEEEEE----CCCCCCEEHHHHHCCCCEEEECCCCCHHEE--ECC
T ss_conf 75110121445766200334656641379974798244454----046762000034147662655755203125--037
Q ss_pred CCEEEEE
Q ss_conf 9157999
Q gi|254780548|r 369 EKFAIGV 375 (447)
Q Consensus 369 ~~~~i~~ 375 (447)
T Consensus 378 gki~~~~ 384 (733)
T COG4590 378 GKIRLAQ 384 (733)
T ss_pred CCEEEEE
T ss_conf 8368997