HHsearch alignment for GI: 254780548 and conserved domain: COG4946

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown].

Probab=99.66  E-value=5.6e-15  Score=117.30  Aligned_cols=103  Identities=17%  Similarity=0.295  Sum_probs=41.7

Q ss_pred             HHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEE---CCCCCCCC
Q ss_conf             997504455554417887513676442100123114554026886217640234557689984899850---34676443
Q gi|254780548|r  163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY---DDEDILRV  239 (447)
Q Consensus       163 ~~~ltG~~G~f~triafv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~---~~~~~~~i  239 (447)
T Consensus        39 M~n~~l~PDI~GD~IiFt~~D--------dlWe~slk~g~~~ritS~lG-Vvnn~kf~pdGrkvaf~rv~~~ss~~taDl  109 (668)
T COG4946          39 MKNYYLNPDIYGDRIIFTCCD--------DLWEYSLKDGKPLRITSGLG-VVNNPKFSPDGRKVAFSRVMLGSSLQTADL  109 (668)
T ss_pred             HHHHHCCCCCCCCEEEEEECH--------HHHHHHHCCCCEEEEECCCC-EECCCCCCCCCCEEEEEEEEECCCCCCCCE
T ss_conf             553412986447679999645--------88776430597167753655-042661889986799999985378765327


Q ss_pred             CEEEECCCCCEEEEECCCCCEE-EEEECCCCCEEEEE
Q ss_conf             0377117971799743798524-44551589556774
Q gi|254780548|r  240 YLMDTRIDRAPKRIGNFRSMIL-APRFSSNGKRALIS  275 (447)
Q Consensus       240 ~~~~~~~g~~~~~~~~~~~~~~-~p~wSPDG~~la~~  275 (447)
T Consensus       110 y~v~~e~Ge-~kRiTyfGr~fT~VaG~~~dg~iiV~T  145 (668)
T COG4946         110 YVVPSEDGE-AKRITYFGRRFTRVAGWIPDGEIIVST  145 (668)
T ss_pred             EEEECCCCC-EEEEEEECCCCCEEECCCCCCCEEEEE
T ss_conf             998578994-788998465332020007889789984