HHsearch alignment for GI: 254780548 and conserved domain: COG5354
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only].
Probab=98.80 E-value=2.2e-06 Score=59.76 Aligned_cols=265 Identities=18% Similarity=0.211 Sum_probs=143.9
Q ss_pred EEEEECCCCCCEECCCCCCCCHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 99984155542000023233777-88999999989999975044555544178875136764421001231145540268
Q gi|254780548|r 127 EFRLWDVKDRKQIIGKKFFSSPA-SWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRY 205 (447)
Q Consensus 127 ~~~L~dv~~~~~i~~~~~~~~~~-~~R~~ah~~ad~i~~~ltG~~G~f~triafv~~~~~~~~~~~~l~i~d~DG~n~~~ 205 (447)
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~----------------------sl~i~e~-t~n~~~ 165 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS----------------------SLYIHEI-TDNIEE 165 (561)
T ss_pred CEEEEECCCCEEEEECCCCCCCCCCCCEEEEEECCHHHHHHCCC----------------------EEEEEEC-CCCCCC
T ss_conf 50588525751685045567753366125653133444400067----------------------1799965-786453
Q ss_pred ----EEECCCCCEEEEEECCCC--CEEEEEEECCC-CCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEC-
Q ss_conf ----862176402345576899--84899850346-7644303771179717997437985244455158955677413-
Q gi|254780548|r 206 ----LTPSRDQILFEPRFSPNQ--QKVAYATYDDE-DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQ- 277 (447)
Q Consensus 206 ----l~~~~~~~~~sP~wSpDG--~~Iay~s~~~~-~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s- 277 (447)
T Consensus 166 ~p~~~lr-~~gi-~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 166 HPFKNLR-PVGI-LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred CCHHHCC-CCCE-EEEEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCEEEEECCCCEEEEEEEE
T ss_conf 7411235-3311-4678657778745799754347997479999736897666655576135289982378669999987
Q ss_pred -------CCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCC-EEEEEECCCCCCEEEEECCCCE
Q ss_conf -------78730389984047741100257764320255216747899723776533-1576402567411122035300
Q gi|254780548|r 278 -------KDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ-LYVMQSNGSDQKRISQDKEASY 349 (447)
Q Consensus 278 -------~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~q-iy~~~~~g~~~~rlT~~~~~~~ 349 (447)
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe~~r-- 318 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPEQKR-- 318 (561)
T ss_pred EEECCCCEECCCEEEEEEECCCCCCEECCCCCCCEEEEECCCCCCEEEEEC--CCCCCEEECCCCCC-EEEECCCCCC--
T ss_conf 540366233243479985114653202156665114554456884468852--56310332145654-6895587665--
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEE-CCCCCCCCEECCCCCEEEEE--EEE-CCCCCEEEEEE
Q ss_conf 00468776888999971499157999988999679966-27875543788789989999--950-89873379999
Q gi|254780548|r 350 FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLV-EDSNLQAPTWSPSGRSLIFS--RKK-DGDTGSKLYSI 421 (447)
Q Consensus 350 ~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt-~~~~~e~P~wSPDG~~i~f~--~~~-~g~~~~~l~~~ 421 (447)
T Consensus 319 NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 319 NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred CCCCCCCCCCEEEEECCCCCCCCEEEECCCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCCCCCCCCEEEEEE
T ss_conf 6401267644899953786535358862677658999861377347402698617983178832256762478982