HHsearch alignment for GI: 254780548 and conserved domain: PRK00178
>PRK00178 tolB translocation protein TolB; Provisional.
Probab=100.00 E-value=0 Score=324.94 Aligned_cols=204 Identities=23% Similarity=0.351 Sum_probs=94.0
Q ss_pred CCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEE
Q ss_conf 30377117971799743798524445515895567741378730389984047741100257764320255216747899
Q gi|254780548|r 239 VYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVF 318 (447)
Q Consensus 239 i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f 318 (447)
T Consensus 182 l~i~D~D-G~n~~~lt~~~~~~lsP~wSPdg~~iaY~s~~~~~p~i~i~dl~tg~~~~l~~~~g~~~~p~~SPdG~~ia~ 260 (433)
T PRK00178 182 LQRSDYD-GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 260 (433)
T ss_pred EEEECCC-CCCEEECCCCCCCEECCEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 9984688-997279236897467000758998899999338986379998777827985416885667527899989999
Q ss_pred EECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEC-CCCCCCCEE
Q ss_conf 7237765331576402567411122035300004687768889999714991579999889996799662-787554378
Q gi|254780548|r 319 ESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTW 397 (447)
Q Consensus 319 ~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~-~~~~e~P~w 397 (447)
T Consensus 261 ~ls~~g~~dIy~~~~~~~~~~rlT~~~~i-dt~Ps~spDG~~i~F~SdR~G~pQIY~~~~~g~~~~RlT~~g~yn~~P~w 339 (433)
T PRK00178 261 VLSKDGNPEIYVMDLASRQLRRLTNHWAI-DTEPFWGKDGRTIYFTSDRGGKPQIYKMDVNGGRAERVTFVGNYNANPKL 339 (433)
T ss_pred EEECCCCCCEEEEECCCCCEEEEECCCCC-CCCEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEE
T ss_conf 98069970058998799950476327875-56531646898899963789994599998999966772135887777108
Q ss_pred CCCCCEEEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCC
Q ss_conf 87899899999508987337999988997147336788736753165
Q gi|254780548|r 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 (447)
Q Consensus 398 SPDG~~i~f~~~~~g~~~~~l~~~~~~G~~~~~~~~~g~~~~P~WsP 444 (447)
T Consensus 340 SPdG~~Iaf~~~~~g~~~f~I~~~d~~~g~~~~lt~~~~dE~Ps~sP 386 (433)
T PRK00178 340 SADEKTLVMVHRQDGFTNFHVAAQDLQRGSVRILTETSLDESPTVAP 386 (433)
T ss_pred CCCCCEEEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCC
T ss_conf 68999899999527854379999958999879866899887975999