HHsearch alignment for GI: 254780548 and conserved domain: PRK04043
>PRK04043 tolB translocation protein TolB; Provisional.
Probab=100.00 E-value=8e-39 Score=276.88 Aligned_cols=218 Identities=12% Similarity=0.167 Sum_probs=177.4
Q ss_pred CEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 8489985034676443037711797179974379852444551-589556774137873038998404774110025776
Q gi|254780548|r 224 QKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS-SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 (447)
Q Consensus 224 ~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wS-PDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~ 302 (447)
T Consensus 156 r~i~~~~~~~~~~~~L~i~D~D-g~n~~~i~~-~~~~i~P~wS~pd~~~i~Y~s~~~~~p~iy~~dl~tg~r~~l~~~~G 233 (419)
T PRK04043 156 RFIVFSKYTSPGKSEIVLADYT-LTYQKVIVK-GGLNIFPKWANKEQTAFYYTSYNEDKPTLLKYNLYTGTKEKIASSEG 233 (419)
T ss_pred EEEEEEECCCCCEEEEEEECCC-CCCCEEECC-CCCCCCCCEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 9999996368870489997888-887538616-99722576047999899999955998589999987798898214798
Q ss_pred CCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 43202552167478997237765331576402567411122035300004687768889999714991579999889996
Q gi|254780548|r 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ 382 (447)
Q Consensus 303 ~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~ 382 (447)
T Consensus 234 ~~~ap~~SPDG~~la~sls~~Gn~dIy~~~l~~~~~~rLT~~~~-Idt~Ps~spDG~~ivF~SdR~G~PQIY~~~~~g~~ 312 (419)
T PRK04043 234 MLVASDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTKTQLTNYPG-IDVNGNFVEDDSRIVFVSDRLGYPNIFMKSLGSGS 312 (419)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCC-CCCCCEECCCCCEEEEEECCCCCCEEEEEECCCCC
T ss_conf 46378699898799999748999518999889996588102788-77552268999889999478999629999789997
Q ss_pred EEEEECCCCCCCCEECCCCCEEEEEEEECC----CCCEEEEEEECCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 799662787554378878998999995089----873379999889971473367887367531655
Q gi|254780548|r 383 ERLLVEDSNLQAPTWSPSGRSLIFSRKKDG----DTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 (447)
Q Consensus 383 ~~~lt~~~~~e~P~wSPDG~~i~f~~~~~g----~~~~~l~~~~~~G~~~~~~~~~g~~~~P~WsP~ 445 (447)
T Consensus 313 ~~Ritf~G~y-n~~~Sp~G~~i~~~~r~~~~~~~~g~f~I~~~~~~~~~~~~LT~~~~dEsPs~sPn 378 (419)
T PRK04043 313 VEQVVFHGRN-NSAVSTYGDYIVYSSRESNNEFGKNVFNLYLISTNSDYIRRLTANGKNQFPRFSSD 378 (419)
T ss_pred EEEEEECCCC-CCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCC
T ss_conf 4888764775-77638999989999835576556762899999799997798337897789869989