HHsearch alignment for GI: 254780548 and conserved domain: PRK04792

>PRK04792 tolB translocation protein TolB; Provisional.
Probab=100.00  E-value=0  Score=873.83  Aligned_cols=426  Identities=25%  Similarity=0.430  Sum_probs=388.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHHCCCCEEECCHHHCCC
Q ss_conf             799999999999998720213316999971586642004630567--753035789999998620175145508655034
Q gi|254780548|r   12 NMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQ   89 (447)
Q Consensus        12 ~m~~~l~l~l~l~~~~~~~~a~A~~~i~It~~~~~pi~IAv~~f~--~~~~~~~~i~~ii~~DL~~SG~F~~i~~~~~~~   89 (447)
T Consensus         1 M~k~~~-~~l~lll~~~s~~A~A~L~IeIt~G~~~~~PIAV~pF~~~g~~~~~~~i~~II~~DL~rSG~F~~l~~~~~~~   79 (450)
T PRK04792          1 MLKRLI-LGLFVLLLSFSQVANAALELVITDGIDSARPIAIVPFKWEGEGKLPTDISAVIASDLQRSGKFSPVPTSKMPQ   79 (450)
T ss_pred             CCHHHH-HHHHHHHHHHHHHHEEEEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCHHHCCC
T ss_conf             938999-9999999986575202499999547777425499375456874325799999998876087855259667445


Q ss_pred             CCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCE---------------------ECCCCCCCCH
Q ss_conf             6676111457788741562189999974046622578999841555420---------------------0002323377
Q gi|254780548|r   90 KITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQ---------------------IIGKKFFSSP  148 (447)
Q Consensus        90 ~~~~~~~~~~f~~W~~~gad~lv~G~i~~~~~~~~~v~~~L~dv~~~~~---------------------i~~~~~~~~~  148 (447)
T Consensus        80 ~P~~~~~-v~f~dWr~lgad~LV~G~v~~~~~g~~~V~f~L~DV~~g~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~  158 (450)
T PRK04792         80 TPYSESE-INFDAWTKMGVDALLTGSVTQNAEGKYVVNYQLVDVVRGQLTKGQSKALSDDGQLVLSKDHVLFNKVATVSA  158 (450)
T ss_pred             CCCCCCC-CCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEECCCH
T ss_conf             8885478-377897643898899999998899749999999980165104553212244432112321000020210477


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf             78899999998999997504455554417887513676442100123114554026886217640234557689984899
Q gi|254780548|r  149 ASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAY  228 (447)
Q Consensus       149 ~~~R~~ah~~ad~i~~~ltG~~G~f~triafv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay  228 (447)
T Consensus       159 ~~~R~~aH~isD~Iy~~lTG~~G~F~trIayV~~~~-~~~~~~~L~i~D~DG~N~~~lt~~~~-~~lsP~wSPdg~~iaY  236 (450)
T PRK04792        159 PRMREYAHRISDLVYEQLTGERGAFLTRIAYVVVND-KDKYPYQLRVADYDGYNERLVLRSKQ-PLMSPAWSPDGKKLAY  236 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC-CCCCEEEEEECCCCCCCCEECCCCCC-EEEEEEECCCCCEEEE
T ss_conf             899999999999999997099753010499999348-88863799973678888179027997-2774338589998999


Q ss_pred             EEECCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEE
Q ss_conf             85034676443037711797179974379852444551589556774137873038998404774110025776432025
Q gi|254780548|r  229 ATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISAS  308 (447)
Q Consensus       229 ~s~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~  308 (447)
T Consensus       237 vs~~~g~-p~iyi~dl~tg~~-~~i~~~~g~n~aP~fSPdG~~la~~ls~~G~~dIY~~dl~~~~~~rlT~~~~idt~Ps  314 (450)
T PRK04792        237 VSFQNGQ-AEIFIMNIYTGKR-EKITSYPRHNGAPRFSPDGKKLALVLSKTGSLQVYTLDLKTRKLTQITRGRSNNTEPF  314 (450)
T ss_pred             EEECCCC-CEEEEEECCCCCE-EEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEECCCCCCCCCCC
T ss_conf             9953998-5799998878978-8740157766578708999889999836997348999889994587125788787700


Q ss_pred             EECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEC
Q ss_conf             52167478997237765331576402567411122035300004687768889999714991579999889996799662
Q gi|254780548|r  309 YSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE  388 (447)
Q Consensus       309 ~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~  388 (447)
T Consensus       315 wSPDG~~i~F~SdR~G~PQIY~~~~~g~~~~RlT~~g~~n-~~p~~SPdG~~Iaf~~~~~g~f~I~v~~~~~~~~~~lt~  393 (450)
T PRK04792        315 WHPDGKSLIFTSDRGGKPQIYRVNLSDGSTKRLTWQGSQN-LGGQITPDGRFLVMVNRSDSGFNLAKQDLETGAVQVLTK  393 (450)
T ss_pred             CCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCC-CCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCEEEECC
T ss_conf             8789988999907899961899988999613432369987-676187889989999815890589999479997698027


Q ss_pred             CCCCCCCEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEC-CCCCCCCCCCCCCCC
Q ss_conf             7875543788789989999950898733799998899714733-678873675316557
Q gi|254780548|r  389 DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI-NTPAYASDPQWVGFM  446 (447)
Q Consensus       389 ~~~~e~P~wSPDG~~i~f~~~~~g~~~~~l~~~~~~G~~~~~~-~~~g~~~~P~WsP~~  446 (447)
T Consensus       394 ~~~dEsPswsPnGr~ivf~s~~~g~~--~l~~vs~dG~~~~~l~~~~g~~~~PaWsP~l  450 (450)
T PRK04792        394 TLLDESPSIAPNGGMVIYSSIYNKKN--VLSMVSIDGRFKARLPATNGRVRAPAWSPFL  450 (450)
T ss_pred             CCCCCCCCCCCCCCEEEEEECCCCCC--EEEEEEECCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             98787977999986899998679970--8999993488037756899875688876889