HHsearch alignment for GI: 254780548 and conserved domain: PRK05137

>PRK05137 tolB translocation protein TolB; Provisional.
Probab=100.00  E-value=0  Score=884.79  Aligned_cols=426  Identities=47%  Similarity=0.842  Sum_probs=398.3

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCC----CCHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCC
Q ss_conf             99999999872021331699997158664200463056775----30357899999986201751455086550346676
Q gi|254780548|r   18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN   93 (447)
Q Consensus        18 ~l~l~l~~~~~~~~a~A~~~i~It~~~~~pi~IAv~~f~~~----~~~~~~i~~ii~~DL~~SG~F~~i~~~~~~~~~~~   93 (447)
T Consensus         8 ~~l~l~l~l~~~~~A~A~L~IeIt~g~~~~ipIAV~pF~~~~~~~~~l~~~i~~II~~DL~~SG~F~~l~~~~~l~~p~~   87 (437)
T PRK05137          8 LALALALALLAAQPARALLRIDITKGNVEPLPIAIPDFLADTGGADELGADIAQVIAADLKRSGLFAPIDKAAFIEKITN   87 (437)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCHHHCCCCCCC
T ss_conf             99999999873121431399999467677335799366578876413568899999977863889556484553467776


Q ss_pred             CCCCCCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             11145778874156218999997404662257899984155542000023233777889999999899999750445555
Q gi|254780548|r   94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF  173 (447)
Q Consensus        94 ~~~~~~f~~W~~~gad~lv~G~i~~~~~~~~~v~~~L~dv~~~~~i~~~~~~~~~~~~R~~ah~~ad~i~~~ltG~~G~f  173 (447)
T Consensus        88 ~~~~~~f~dW~~lgad~LV~G~v~~~~~g~~~v~f~L~DV~~~~~l~g~~~~~~~~~~R~~aH~iaD~Iye~LTG~~G~F  167 (437)
T PRK05137         88 PDAAPRFADWKAINAQALVTGRVTKQGDGRLKVEFRLWDVFAGQQLLGQQFFTSPENWRRAAHKIADAIYERLTGEKGYF  167 (437)
T ss_pred             CCCCCCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEEECCCHHEECCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             45673747886569888999888987996499999999746401022608996689999999999999999860998655


Q ss_pred             CCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEE
Q ss_conf             44178875136764421001231145540268862176402345576899848998503467644303771179717997
Q gi|254780548|r  174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI  253 (447)
Q Consensus       174 ~triafv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~  253 (447)
T Consensus       168 ~TrIayVs~~g~~~~~~~~L~i~D~DG~n~~~l~~~~~~-ilsP~wSPdg~~iaY~S~~~~~-p~i~i~dl~tg~~-~~~  244 (437)
T PRK05137        168 DTRIVYVAESGPKNARVKRLAIMDQDGANVRYLTDGSSL-VLTPRFSPTRQEITYMSYANGR-PRVYLLDLETGQR-ELV  244 (437)
T ss_pred             CCEEEEEEECCCCCCCEEEEEEECCCCCCCEEECCCCCC-CCCCCCCCCCCEEEEEEECCCC-CEEEEEECCCCCE-EEC
T ss_conf             560899980178887457999988899985793047875-4243385899879999944998-5799999878988-850


Q ss_pred             ECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEE
Q ss_conf             43798524445515895567741378730389984047741100257764320255216747899723776533157640
Q gi|254780548|r  254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS  333 (447)
Q Consensus       254 ~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~  333 (447)
T Consensus       245 ~~~~G~n~ap~~SPdG~~la~~ls~~Gn~dIy~~~l~~~~~~rlT~~~~idt~PswSPDG~~i~F~SdR~G~PQIY~~~~  324 (437)
T PRK05137        245 GNFPGMTFAPRFSPDGQKVVMSLAQGGNTDIYTMDLRSRTTTRLTDTPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  324 (437)
T ss_pred             CCCCCCEECCEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC
T ss_conf             46899520530989998999999148995489998888835898606777778526799998999968999944999989


Q ss_pred             CCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCEECCCCCEEEEEEEECCC
Q ss_conf             25674111220353000046877688899997149915799998899967996627875543788789989999950898
Q gi|254780548|r  334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD  413 (447)
Q Consensus       334 ~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~~~~~e~P~wSPDG~~i~f~~~~~g~  413 (447)
T Consensus       325 ~g~~~~RiT~~~g~~-~~p~wSPdG~~iaf~~~~~g~~~I~~~~~~~~~~~~lT~~~~dEsPs~sPnG~~i~f~~~~~~~  403 (437)
T PRK05137        325 DGSNPRRISFGGGRY-STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLDEGPTWAPNGRVLMFFRETPGS  403 (437)
T ss_pred             CCCCEEEEECCCCCC-CCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf             999768865279865-7732678999899999529848899996799976980178988897699999999999840899


Q ss_pred             CCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             7337999988997147336788736753165579
Q gi|254780548|r  414 TGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD  447 (447)
Q Consensus       414 ~~~~l~~~~~~G~~~~~~~~~g~~~~P~WsP~~~  447 (447)
T Consensus       404 g~~~l~~vd~~G~~~~~l~~~g~~~~PaWsP~l~  437 (437)
T PRK05137        404 GGPKLYTVDLTGRNERPVPTPGDASDPAWSPLLP  437 (437)
T ss_pred             CEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             7279999927985588779998757887788898