HHsearch alignment for GI: 254780548 and conserved domain: PRK05137
>PRK05137 tolB translocation protein TolB; Provisional.
Probab=100.00 E-value=0 Score=884.79 Aligned_cols=426 Identities=47% Similarity=0.842 Sum_probs=398.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCC----CCHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCC
Q ss_conf 99999999872021331699997158664200463056775----30357899999986201751455086550346676
Q gi|254780548|r 18 CLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI----DELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITN 93 (447)
Q Consensus 18 ~l~l~l~~~~~~~~a~A~~~i~It~~~~~pi~IAv~~f~~~----~~~~~~i~~ii~~DL~~SG~F~~i~~~~~~~~~~~ 93 (447)
T Consensus 8 ~~l~l~l~l~~~~~A~A~L~IeIt~g~~~~ipIAV~pF~~~~~~~~~l~~~i~~II~~DL~~SG~F~~l~~~~~l~~p~~ 87 (437)
T PRK05137 8 LALALALALLAAQPARALLRIDITKGNVEPLPIAIPDFLADTGGADELGADIAQVIAADLKRSGLFAPIDKAAFIEKITN 87 (437)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCHHHCCCCCCC
T ss_conf 99999999873121431399999467677335799366578876413568899999977863889556484553467776
Q ss_pred CCCCCCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 11145778874156218999997404662257899984155542000023233777889999999899999750445555
Q gi|254780548|r 94 PDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDF 173 (447)
Q Consensus 94 ~~~~~~f~~W~~~gad~lv~G~i~~~~~~~~~v~~~L~dv~~~~~i~~~~~~~~~~~~R~~ah~~ad~i~~~ltG~~G~f 173 (447)
T Consensus 88 ~~~~~~f~dW~~lgad~LV~G~v~~~~~g~~~v~f~L~DV~~~~~l~g~~~~~~~~~~R~~aH~iaD~Iye~LTG~~G~F 167 (437)
T PRK05137 88 PDAAPRFADWKAINAQALVTGRVTKQGDGRLKVEFRLWDVFAGQQLLGQQFFTSPENWRRAAHKIADAIYERLTGEKGYF 167 (437)
T ss_pred CCCCCCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEEECCCHHEECCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 45673747886569888999888987996499999999746401022608996689999999999999999860998655
Q ss_pred CCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEE
Q ss_conf 44178875136764421001231145540268862176402345576899848998503467644303771179717997
Q gi|254780548|r 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 (447)
Q Consensus 174 ~triafv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~ 253 (447)
T Consensus 168 ~TrIayVs~~g~~~~~~~~L~i~D~DG~n~~~l~~~~~~-ilsP~wSPdg~~iaY~S~~~~~-p~i~i~dl~tg~~-~~~ 244 (437)
T PRK05137 168 DTRIVYVAESGPKNARVKRLAIMDQDGANVRYLTDGSSL-VLTPRFSPTRQEITYMSYANGR-PRVYLLDLETGQR-ELV 244 (437)
T ss_pred CCEEEEEEECCCCCCCEEEEEEECCCCCCCEEECCCCCC-CCCCCCCCCCCEEEEEEECCCC-CEEEEEECCCCCE-EEC
T ss_conf 560899980178887457999988899985793047875-4243385899879999944998-5799999878988-850
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 43798524445515895567741378730389984047741100257764320255216747899723776533157640
Q gi|254780548|r 254 GNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS 333 (447)
Q Consensus 254 ~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~ 333 (447)
T Consensus 245 ~~~~G~n~ap~~SPdG~~la~~ls~~Gn~dIy~~~l~~~~~~rlT~~~~idt~PswSPDG~~i~F~SdR~G~PQIY~~~~ 324 (437)
T PRK05137 245 GNFPGMTFAPRFSPDGQKVVMSLAQGGNTDIYTMDLRSRTTTRLTDTPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 324 (437)
T ss_pred CCCCCCEECCEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC
T ss_conf 46899520530989998999999148995489998888835898606777778526799998999968999944999989
Q ss_pred CCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCEECCCCCEEEEEEEECCC
Q ss_conf 25674111220353000046877688899997149915799998899967996627875543788789989999950898
Q gi|254780548|r 334 NGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGD 413 (447)
Q Consensus 334 ~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~~~~~e~P~wSPDG~~i~f~~~~~g~ 413 (447)
T Consensus 325 ~g~~~~RiT~~~g~~-~~p~wSPdG~~iaf~~~~~g~~~I~~~~~~~~~~~~lT~~~~dEsPs~sPnG~~i~f~~~~~~~ 403 (437)
T PRK05137 325 DGSNPRRISFGGGRY-STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLDEGPTWAPNGRVLMFFRETPGS 403 (437)
T ss_pred CCCCEEEEECCCCCC-CCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 999768865279865-7732678999899999529848899996799976980178988897699999999999840899
Q ss_pred CCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 7337999988997147336788736753165579
Q gi|254780548|r 414 TGSKLYSIDLNGRNETLINTPAYASDPQWVGFMD 447 (447)
Q Consensus 414 ~~~~l~~~~~~G~~~~~~~~~g~~~~P~WsP~~~ 447 (447)
T Consensus 404 g~~~l~~vd~~G~~~~~l~~~g~~~~PaWsP~l~ 437 (437)
T PRK05137 404 GGPKLYTVDLTGRNERPVPTPGDASDPAWSPLLP 437 (437)
T ss_pred CEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 7279999927985588779998757887788898