HHsearch alignment for GI: 254780548 and conserved domain: PRK05137
>PRK05137 tolB translocation protein TolB; Provisional.
Probab=100.00 E-value=0 Score=326.01 Aligned_cols=217 Identities=21% Similarity=0.419 Sum_probs=135.9
Q ss_pred CEEEEEEECCCC---CCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 848998503467---64430377117971799743798524445515895567741378730389984047741100257
Q gi|254780548|r 224 QKVAYATYDDED---ILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 (447)
Q Consensus 224 ~~Iay~s~~~~~---~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~ 300 (447)
T Consensus 169 TrIayVs~~g~~~~~~~~L~i~D~D-G~n~~~l~~~~~~ilsP~wSPdg~~iaY~S~~~~~p~i~i~dl~tg~~~~~~~~ 247 (437)
T PRK05137 169 TRIVYVAESGPKNARVKRLAIMDQD-GANVRYLTDGSSLVLTPRFSPTRQEITYMSYANGRPRVYLLDLETGQRELVGNF 247 (437)
T ss_pred CEEEEEEECCCCCCCEEEEEEECCC-CCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEECCCC
T ss_conf 6089998017888745799998889-998579304787542433858998799999449985799999878988850468
Q ss_pred CCCCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 76432025521674789972377653315764025674111220353000046877688899997149915799998899
Q gi|254780548|r 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 (447)
Q Consensus 301 ~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g 380 (447)
T Consensus 248 ~G~n~ap~~SPdG~~la~~ls~~Gn~dIy~~~l~~~~~~rlT~~~~i-dt~PswSPDG~~i~F~SdR~G~PQIY~~~~~g 326 (437)
T PRK05137 248 PGMTFAPRFSPDGQKVVMSLAQGGNTDIYTMDLRSRTTTRLTDTPAI-DTSPSYSPDGSQIVFESDRSGSPQLYVMNADG 326 (437)
T ss_pred CCCEECCEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCC-CCCCCCCCCCCEEEEEECCCCCCEEEEEECCC
T ss_conf 99520530989998999999148995489998888835898606777-77852679999899996899994499998999
Q ss_pred CCEEEEEC-CCCCCCCEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCC
Q ss_conf 96799662-78755437887899899999508987337999988997147336788736753165
Q gi|254780548|r 381 SQERLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVG 444 (447)
Q Consensus 381 ~~~~~lt~-~~~~e~P~wSPDG~~i~f~~~~~g~~~~~l~~~~~~G~~~~~~~~~g~~~~P~WsP 444 (447)
T Consensus 327 ~~~~RiT~~~g~~~~p~wSPdG~~iaf~~~~~g~--~~I~~~~~~~~~~~~lT~~~~dEsPs~sP 389 (437)
T PRK05137 327 SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQ--FSIGVMKPDGSGERILTSGFLDEGPTWAP 389 (437)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCE--EEEEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 9768865279865773267899989999952984--88999967999769801789888976999