HHsearch alignment for GI: 254780548 and conserved domain: PRK13614
>PRK13614 lipoprotein LpqB; Provisional.
Probab=97.63 E-value=0.0048 Score=37.48 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=91.7
Q ss_pred EEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC-
Q ss_conf 3455768998489985034676443037711797179974379852444551589556774137873038998404774-
Q gi|254780548|r 215 FEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNA- 293 (447)
Q Consensus 215 ~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~- 293 (447)
T Consensus 346 ~s~a~s~~~~~~A~v~~---~~~~l~~~~--~g~~~~~~~~g~-~Lt~PSwD~~g-~v-W~ad~~~~~~~~~~~~~g~~~ 417 (573)
T PRK13614 346 ASPAESPVSQTVAFLNG---ADTTLYTVS--PGQPARRLTSGS-TLTRPSFSPQD-WV-WTAGPGASGRIHAYQPTGTAE 417 (573)
T ss_pred CCCEECCCCCEEEEECC---CCCEEEEEC--CCCCCEEEECCC-CCCCCCCCCCC-CE-EEECCCCCCEEEEECCCCCCC
T ss_conf 65223567735999868---885789724--897304763388-65687186999-87-981169985078734787655
Q ss_pred ---CCC--CCCC--CC-CCCCEEEECCCCEEEEEECCCCCCCEEEEEE---CCCCCCEEEEEC----CCCEEEEEECCCC
Q ss_conf ---110--0257--76-4320255216747899723776533157640---256741112203----5300004687768
Q gi|254780548|r 294 ---TER--LTNT--LF-INISASYSPDSSQIVFESDREGKEQLYVMQS---NGSDQKRISQDK----EASYFDPVWSPQG 358 (447)
Q Consensus 294 ---~~~--lT~~--~~-~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~---~g~~~~rlT~~~----~~~~~~p~wSPdG 358 (447)
T Consensus 418 g~~~~~v~~~~~wl~g~~I~~lrvSrDG~R~Avv~~~~g~~~l~v~~IvR~~~G~p~~L~~p~~~~~~~~v~~~sW~g~- 496 (573)
T PRK13614 418 GAQAPTVTLTADWLRGRTVKSLRVSREGSRALVISENNGKSSVQVTGIVRNEDGTPRELTAPNTLLADVAVDTGQWVGS- 496 (573)
T ss_pred CCCCCCEEECCCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEEEEECCCCCEEEECCCEECCCCCCCEEEEECCC-
T ss_conf 6656531304665689777899978886479999974893189999999899995135034410355676101177179-
Q ss_pred CEEEEEE-CCCCCEEEEEEECCCCCEEEEE
Q ss_conf 8899997-1499157999988999679966
Q gi|254780548|r 359 DLIAFTK-FSGEKFAIGVMKKDGSQERLLV 387 (447)
Q Consensus 359 ~~Iaf~~-~~~~~~~i~~~~~~g~~~~~lt 387 (447)
T Consensus 497 ~~LvVl~~~~~~~~q~~~v~~~g~~~~~l~ 526 (573)
T PRK13614 497 STVAVTALSATSNVVPELLSVAAHYPQQLA 526 (573)
T ss_pred CEEEEEECCCCCCEEEEEEECCCCCCCCCC
T ss_conf 889999436898134799966787756678