HHsearch alignment for GI: 254780548 and conserved domain: PRK13615
>PRK13615 lipoprotein LpqB; Provisional.
Probab=97.28 E-value=0.013 Score=34.60 Aligned_cols=159 Identities=13% Similarity=0.178 Sum_probs=64.9
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEE
Q ss_conf 44551589556774137873038998404774110025776432025521674789972377653315764025674111
Q gi|254780548|r 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRI 341 (447)
Q Consensus 262 ~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rl 341 (447)
T Consensus 313 a~~vs~dg~~~a~~~~-~~---~~~~~~~~~~~~~~~~~~~-Lt~PS~D~~G~--vWt~d~~~~~~l~~~~~~g-~~~~v 384 (532)
T PRK13615 313 AATLSADGRQAAVRNA-SG---VWSVGDGDRDAVLLDTRPG-LVAPSLDAQGY--VWSTPASDPRGLVAWGPDG-VGHPV 384 (532)
T ss_pred CCEECCCCCEEEEECC-CC---EEEECCCCCCCEEECCCCC-CCCCCCCCCCC--EEEECCCCCCEEEEECCCC-CEEEE
T ss_conf 6256468756999848-73---0895148743056326887-55762879998--7973279981389987898-60699
Q ss_pred E--EECCCCEEEEEECCCCCEEEEEECCCCCEE--EEEEECCCCCEEEEEC--------CCCCCCCEECCCCCEEEEEEE
Q ss_conf 2--203530000468776888999971499157--9999889996799662--------787554378878998999995
Q gi|254780548|r 342 S--QDKEASYFDPVWSPQGDLIAFTKFSGEKFA--IGVMKKDGSQERLLVE--------DSNLQAPTWSPSGRSLIFSRK 409 (447)
Q Consensus 342 T--~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~--i~~~~~~g~~~~~lt~--------~~~~e~P~wSPDG~~i~f~~~ 409 (447)
T Consensus 385 ~v~~l~~~~V~slrVS~DG~RiAvv~~~~~~~~l~v~~I~Rd~G~p~~l~~~pi~l~a~~~~~~~~sW~g~s~l~Vl~r~ 464 (532)
T PRK13615 385 AVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLA 464 (532)
T ss_pred ECCCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEEEC
T ss_conf 64368896699999888875899999849953899999993799887422035650478885335698579779999722
Q ss_pred ECCCCCEEEEEEECCCCCEEE
Q ss_conf 089873379999889971473
Q gi|254780548|r 410 KDGDTGSKLYSIDLNGRNETL 430 (447)
Q Consensus 410 ~~g~~~~~l~~~~~~G~~~~~ 430 (447)
T Consensus 465 ~gg~--~qv~~~~v~G~~~~~ 483 (532)
T PRK13615 465 PDGE--RQVELHQVGGPSKDM 483 (532)
T ss_pred CCCC--EEEEEEECCCCCCCC
T ss_conf 7982--469999679854556