HHsearch alignment for GI: 254780548 and conserved domain: PRK13616

>PRK13616 lipoprotein LpqB; Provisional.
Probab=97.21  E-value=0.015  Score=34.13  Aligned_cols=165  Identities=12%  Similarity=0.103  Sum_probs=88.1

Q ss_pred             EEEEEECCCCCEEEEEEECCCCC----CCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE-E
Q ss_conf             23455768998489985034676----443037711797179974379852444551589556774137873038998-4
Q gi|254780548|r  214 LFEPRFSPNQQKVAYATYDDEDI----LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV-D  288 (447)
Q Consensus       214 ~~sP~wSpDG~~Iay~s~~~~~~----~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~-d  288 (447)
T Consensus       351 ~~saavS~d~~~~AaV~~~~~~~~~~~~~L~~G~~--gg~~~~~l~~~-tLTrPSW~~~~d~~WtV--~DG~~vvR~~r~  425 (590)
T PRK13616        351 QTSAALSRSGNVVAAVVTLGRGAPDPAASLWVGAL--GGEAVQVLEGH-SLTRPSWSLDADALWVV--VDGNTVVRVIRS  425 (590)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCC--CCCCCEEECCC-CCCCCCCCCCCCEEEEE--ECCCCEEEEEEC
T ss_conf             35899858888589998437788764127860588--88741110477-54677277899669999--339824898831


Q ss_pred             CCCCCCCCC-------CC-CCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEEC--CCCCCEEE------EECCCCEEEE
Q ss_conf             047741100-------25-77643202552167478997237765331576402--56741112------2035300004
Q gi|254780548|r  289 LQSNATERL-------TN-TLFINISASYSPDSSQIVFESDREGKEQLYVMQSN--GSDQKRIS------QDKEASYFDP  352 (447)
Q Consensus       289 ~~~~~~~~l-------T~-~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~--g~~~~rlT------~~~~~~~~~p  352 (447)
T Consensus       426 ~~~G~~~~~~Vd~~~l~~~~~g~Is~lRlS~DGvR~A~ivd--G--~v~vg~V~r~~~G~~~l~~~r~~~p~l~~~a~sl  501 (590)
T PRK13616        426 PATGQPARIPVDSSAVASRFPGPISELQLSRDGVRAAMIID--G--KVYLAVVEQTQPGQYALTYPRELGFGLGETAVSL  501 (590)
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEC--C--EEEEEEEEECCCCCEEEEEHHHHCCCCCCCEEEE
T ss_conf             78884377750110246568983469997788607999988--9--8999999826998578754154174546845773


Q ss_pred             EECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECC
Q ss_conf             6877688899997149915799998899967996627
Q gi|254780548|r  353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED  389 (447)
Q Consensus       353 ~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~~  389 (447)
T Consensus       502 ~W~~~~~LvV--g~~~~~~pv~~V~~DGs~~s~~ps~  536 (590)
T PRK13616        502 SWRTGDDILV--GRSDPDHPVWYVNLDGSNASDLPSR  536 (590)
T ss_pred             EECCCCEEEE--EEECCCCEEEEEEECCCCCCCCCCC
T ss_conf             5558986999--7016987259998078666678875