HHsearch alignment for GI: 254780548 and conserved domain: PRK13616
>PRK13616 lipoprotein LpqB; Provisional.
Probab=97.21 E-value=0.015 Score=34.13 Aligned_cols=165 Identities=12% Similarity=0.103 Sum_probs=88.1
Q ss_pred EEEEEECCCCCEEEEEEECCCCC----CCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEE-E
Q ss_conf 23455768998489985034676----443037711797179974379852444551589556774137873038998-4
Q gi|254780548|r 214 LFEPRFSPNQQKVAYATYDDEDI----LRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSV-D 288 (447)
Q Consensus 214 ~~sP~wSpDG~~Iay~s~~~~~~----~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~-d 288 (447)
T Consensus 351 ~~saavS~d~~~~AaV~~~~~~~~~~~~~L~~G~~--gg~~~~~l~~~-tLTrPSW~~~~d~~WtV--~DG~~vvR~~r~ 425 (590)
T PRK13616 351 QTSAALSRSGNVVAAVVTLGRGAPDPAASLWVGAL--GGEAVQVLEGH-SLTRPSWSLDADALWVV--VDGNTVVRVIRS 425 (590)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCC--CCCCCEEECCC-CCCCCCCCCCCCEEEEE--ECCCCEEEEEEC
T ss_conf 35899858888589998437788764127860588--88741110477-54677277899669999--339824898831
Q ss_pred CCCCCCCCC-------CC-CCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEEC--CCCCCEEE------EECCCCEEEE
Q ss_conf 047741100-------25-77643202552167478997237765331576402--56741112------2035300004
Q gi|254780548|r 289 LQSNATERL-------TN-TLFINISASYSPDSSQIVFESDREGKEQLYVMQSN--GSDQKRIS------QDKEASYFDP 352 (447)
Q Consensus 289 ~~~~~~~~l-------T~-~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~--g~~~~rlT------~~~~~~~~~p 352 (447)
T Consensus 426 ~~~G~~~~~~Vd~~~l~~~~~g~Is~lRlS~DGvR~A~ivd--G--~v~vg~V~r~~~G~~~l~~~r~~~p~l~~~a~sl 501 (590)
T PRK13616 426 PATGQPARIPVDSSAVASRFPGPISELQLSRDGVRAAMIID--G--KVYLAVVEQTQPGQYALTYPRELGFGLGETAVSL 501 (590)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEC--C--EEEEEEEEECCCCCEEEEEHHHHCCCCCCCEEEE
T ss_conf 78884377750110246568983469997788607999988--9--8999999826998578754154174546845773
Q ss_pred EECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECC
Q ss_conf 6877688899997149915799998899967996627
Q gi|254780548|r 353 VWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED 389 (447)
Q Consensus 353 ~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~~ 389 (447)
T Consensus 502 ~W~~~~~LvV--g~~~~~~pv~~V~~DGs~~s~~ps~ 536 (590)
T PRK13616 502 SWRTGDDILV--GRSDPDHPVWYVNLDGSNASDLPSR 536 (590)
T ss_pred EECCCCEEEE--EEECCCCEEEEEEECCCCCCCCCCC
T ss_conf 5558986999--7016987259998078666678875