HHsearch alignment for GI: 254780548 and conserved domain: TIGR03300
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.35 E-value=0.011 Score=35.09 Aligned_cols=254 Identities=15% Similarity=0.189 Sum_probs=131.5
Q ss_pred EEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEECC-CCCEEEE
Q ss_conf 999841555420000232337778899999998999997504455554417887513676442100123114-5540268
Q gi|254780548|r 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR-DGANIRY 205 (447)
Q Consensus 127 ~~~L~dv~~~~~i~~~~~~~~~~~~R~~ah~~ad~i~~~ltG~~G~f~triafv~~~~~~~~~~~~l~i~d~-DG~n~~~ 205 (447)
T Consensus 76 ~v~Ald~~tG~~~W~~~~~~------------------~i~~g~~v~~~~-v~vgt~~G------~l~Ald~~tG~~~W~ 130 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDE------------------RLSGGVGADGGL-VFVGTEKG------EVIALDAEDGKELWR 130 (377)
T ss_pred EEEEEECCCCCEEEEEECCC------------------CEEEEEEEECCE-EEEEECCC------EEEEEECCCCCEEEE
T ss_conf 59999965894887888699------------------815603882999-99990997------599999779959999
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEE-CCCCC----EEEEEECCCCCEEEEEECCCC
Q ss_conf 8621764023455768998489985034676443037711797179974-37985----244455158955677413787
Q gi|254780548|r 206 LTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG-NFRSM----ILAPRFSSNGKRALISVQKDE 280 (447)
Q Consensus 206 l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~~-~~~~~----~~~p~wSPDG~~la~~~s~~g 280 (447)
T Consensus 131 ~~-~~~~v~s~P~v~-~-g~V~v~t---~d-g~l~ald~~tG~~~W~~~~~~p~ltlrg~s~p~~~-~-~~v~~-g~~~G 200 (377)
T TIGR03300 131 AK-LSSEVLSPPLVA-N-GLVVVRT---ND-GRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLV-GFAGG 200 (377)
T ss_pred EE-CCCCEECCCEEE-C-CEEEEEE---CC-CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEE-C-CEEEE-ECCCC
T ss_conf 90-798404587886-9-9999997---89-96999978799789985246875101565553798-9-99999-82699
Q ss_pred CEEEEEEECCCCCCCC---CCCCCC---------CCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCC
Q ss_conf 3038998404774110---025776---------4320255216747899723776533157640256741112203530
Q gi|254780548|r 281 AMDIYSVDLQSNATER---LTNTLF---------INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEAS 348 (447)
Q Consensus 281 ~~~I~~~d~~~~~~~~---lT~~~~---------~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~ 348 (447)
T Consensus 201 --~l~ald~~tG~~~W~~~v~~~~G~telerl~Di~~~P~v~--~~~vy-~~s~~G--~l~a~d~~sG~~~W-~~~-~ss 271 (377)
T TIGR03300 201 --KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--GGQVY-AVSYQG--RVAALDLRSGRVLW-KRD-ASS 271 (377)
T ss_pred --EEEEEECCCCCEEEEEEECCCCCCCCCCCEECCCCCCCCC--CCEEE-EEECCC--EEEEEECCCCCEEE-EEE-CCC
T ss_conf --8999999999399881003566776421100124676213--98899-970488--49998721694730-152-675
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECC---CCCCCCEECCCCCEEEEEEEECCCCCEEEEEEEC-C
Q ss_conf 00046877688899997149915799998899967996627---8755437887899899999508987337999988-9
Q gi|254780548|r 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED---SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-N 424 (447)
Q Consensus 349 ~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~~---~~~e~P~wSPDG~~i~f~~~~~g~~~~~l~~~~~-~ 424 (447)
T Consensus 272 ~~~~~v--~~~~v-yv~~~~g--~l~Ald~~tG~~~W~~~~l~~r~~s~P~~~--g~~v~v-gd~~G----~l~~ld~~t 339 (377)
T TIGR03300 272 YQGPAV--DDNRL-YVTDADG--VVVALDRRSGSELWKNDELKYRQLTAPAVV--GGYLVV-GDFEG----YLHWLSRED 339 (377)
T ss_pred CCCEEE--ECCEE-EEECCCC--CEEEEECCCCCEEECCCCCCCCCCCCCEEE--CCEEEE-ECCCC----EEEEEECCC
T ss_conf 444058--75619-9986898--479999899957801455566554488898--999999-96898----899999888
Q ss_pred CCCEEECCCCCC
Q ss_conf 971473367887
Q gi|254780548|r 425 GRNETLINTPAY 436 (447)
Q Consensus 425 G~~~~~~~~~g~ 436 (447)
T Consensus 340 G~~~~r~~~~g~ 351 (377)
T TIGR03300 340 GSFVARLKTDGS 351 (377)
T ss_pred CCEEEEEECCCC
T ss_conf 979999985899