HHsearch alignment for GI: 254780548 and conserved domain: cd00200
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto.
Probab=99.28 E-value=1.1e-08 Score=75.32 Aligned_cols=234 Identities=17% Similarity=0.235 Sum_probs=136.6
Q ss_pred EEEECCCCCE-EEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCE
Q ss_conf 1231145540-268862176402345576899848998503467644303771179717997437985244455158955
Q gi|254780548|r 193 LCVMDRDGAN-IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKR 271 (447)
Q Consensus 193 l~i~d~DG~n-~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~ 271 (447)
T Consensus 33 v~iw~~~~~~~~~~~~~h~~-~i~~i~~~~~~~~i~~~~~-d---~~v~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 107 (289)
T cd00200 33 IKVWDLETGELLRTLKGHTG-PVRDVAASADGTYLASGSS-D---KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred EEEEECCCCCEEEEEECCCC-CEEEEEEECCCCEEEEEEC-C---CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCE
T ss_conf 99999999919899947889-7589999359999999979-9---96999756888288999278884889999999999
Q ss_pred EEEEECCCCCEEEEEEECCCCCCCC-CCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCEE
Q ss_conf 6774137873038998404774110-025776432025521674789972377653315764025674111220353000
Q gi|254780548|r 272 ALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYF 350 (447)
Q Consensus 272 la~~~s~~g~~~I~~~d~~~~~~~~-lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~~~ 350 (447)
T Consensus 108 l~-~~~~d~~i~i~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~~dg~--v~i~d~~~~~~~~~~~~h~~~i~ 181 (289)
T cd00200 108 LS-SSSRDKTIKVW--DVETGKCLTTLRGHTDWVNSVAFSPDGTFVA-SSSQDGT--IKLWDLRTGKCVATLTGHTGEVN 181 (289)
T ss_pred EE-EECCCCCEEEE--ECCCCCEEEEECCCCCCEEEEEECCCCCEEE-EECCCCE--EEEEECCCCCEEEEEEECCCCCE
T ss_conf 99-98489818987--4058617776068889725999837998999-9738997--99999999949899986155632
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEEECCCCCE-EEEEC-CCCCCCCEECCCCCEEEEEEEECCCCCEEEEEEEC-CCCC
Q ss_conf 046877688899997149915799998899967-99662-78755437887899899999508987337999988-9971
Q gi|254780548|r 351 DPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVE-DSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRN 427 (447)
Q Consensus 351 ~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~-~~lt~-~~~~e~P~wSPDG~~i~f~~~~~g~~~~~l~~~~~-~G~~ 427 (447)
T Consensus 182 ~i~~~~~~~~~~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~-~~~d~----~i~i~d~~~~~~ 253 (289)
T cd00200 182 SVAFSPDGEKLLSS-SSDG--TIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS-GSEDG----TIRVWDLRTGEC 253 (289)
T ss_pred EEEECCCCCCCEEE-CCCC--EEEEEECCCCCEEEEEECCCCEEEEEEECCCCCEEEE-ECCCC----EEEEEECCCCEE
T ss_conf 68888999814741-5999--8999999999299999178850788981799659999-92999----899999999909
Q ss_pred EEECC-CCCCCCCCCCCCC
Q ss_conf 47336-7887367531655
Q gi|254780548|r 428 ETLIN-TPAYASDPQWVGF 445 (447)
Q Consensus 428 ~~~~~-~~g~~~~P~WsP~ 445 (447)
T Consensus 254 ~~~~~~h~~~V~~~~~~~~ 272 (289)
T cd00200 254 VQTLSGHTNSVTSLAWSPD 272 (289)
T ss_pred EEEEECCCCCEEEEEEECC
T ss_conf 9999589998999999189